View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3318_high_9 (Length: 239)
Name: NF3318_high_9
Description: NF3318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3318_high_9 |
 | |
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| [»] scaffold0013 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5666382 - 5666585
Alignment:
| Q |
1 |
atttaacagctttgcgaattgcagcacaattctcataagtcttaccggcggctgttagaccgccaagagcaaaccaagaaccataagtgaagcaaattcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5666382 |
atttaacagctttgcgaattgcagcacaattctcataagtcttaccggcggctgttagaccgccaagagcaaaccaagaaccataagtgaagcaaattcc |
5666481 |
T |
|
| Q |
101 |
ccaatttccataccatgaaccatcacttgtttgtttatcttcaaggaatttaactgcttttgcaatgaaattctctacttcttcctttctatgctcggga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5666482 |
ccaatttccataccatgaaccatcacttgtttgtttatcttcaaggaatttaactgcttttgcaatgaaattctctacttcttcctttctatgctcggga |
5666581 |
T |
|
| Q |
201 |
tata |
204 |
Q |
| |
|
|||| |
|
|
| T |
5666582 |
tata |
5666585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5687452 - 5687655
Alignment:
| Q |
1 |
atttaacagctttgcgaattgcagcacaattctcataagtcttaccggcggctgttagaccgccaagagcaaaccaagaaccataagtgaagcaaattcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5687452 |
atttaacagctttgcgaattgcagcacaattctcataagtcttgccggcggctgttagaccgccaagagcaaaccaagaaccataagtgaagcaaattcc |
5687551 |
T |
|
| Q |
101 |
ccaatttccataccatgaaccatcacttgtttgtttatcttcaaggaatttaactgcttttgcaatgaaattctctacttcttcctttctatgctcggga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5687552 |
ccaatttccataccatgaaccatcacttgtttgtttatcttcaaggaatttaactgcttttgcaatgaaattctctacttcttcctttctatgctcggga |
5687651 |
T |
|
| Q |
201 |
tata |
204 |
Q |
| |
|
|||| |
|
|
| T |
5687652 |
tata |
5687655 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5719568 - 5719771
Alignment:
| Q |
1 |
atttaacagctttgcgaattgcagcacaattctcataagtcttaccggcggctgttagaccgccaagagcaaaccaagaaccataagtgaagcaaattcc |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| || ||| ||| |||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
5719568 |
atttaacagctttgcgaattgcaacacaattctcataagtcttgcccgcgactgctagaccaccaagagcaaaccaagaaccataagtgaagcaaattcc |
5719667 |
T |
|
| Q |
101 |
ccaatttccataccatgaaccatcacttgtttgtttatcttcaaggaatttaactgcttttgcaatgaaattctctacttcttcctttctatgctcggga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5719668 |
ccaatttccataccatgaaccatcacttgtttgtttatcttcaaggaattgaactgcttttgcaatgaaattctctacttcttcctttctatgctcggga |
5719767 |
T |
|
| Q |
201 |
tata |
204 |
Q |
| |
|
|||| |
|
|
| T |
5719768 |
tata |
5719771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 5652890 - 5653011
Alignment:
| Q |
56 |
tagaccgccaagagcaaaccaagaaccataagtgaagcaaattccccaatttccataccatgaaccatcacttgtttgtttatcttcaaggaatttaact |
155 |
Q |
| |
|
|||||||||||| || || ||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||| | ||||| |||| ||| |
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|
| T |
5652890 |
tagaccgccaagtgcgaagaaagaaccataaatgaagcaaattccccaattcccataccatgaaccatcgattgtttgtgaagattcaatgaatcgaacc |
5652989 |
T |
|
| Q |
156 |
gcttttgcaatgaaattctcta |
177 |
Q |
| |
|
|| |||||||||||||| |||| |
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|
| T |
5652990 |
gcatttgcaatgaaattatcta |
5653011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 105986 - 105783
Alignment:
| Q |
1 |
atttaacagctttgcgaattgcagcacaattctcataagtcttaccggcggctgttagaccgccaagagcaaaccaagaaccataagtgaagcaaattcc |
100 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| ||||||||| || || |||| || ||| |||||||||||||||||||||||||||||||||| ||| |
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|
| T |
105986 |
atttaacagctttgcgaatagcagcgcaattggtataagtcttgccagcagctgctaaaccaccaagagcaaaccaagaaccataagtgaagcaaactcc |
105887 |
T |
|
| Q |
101 |
ccaatttccataccatgaaccatcacttgtttgtttatcttcaaggaatttaactgcttttgcaatgaaattctctacttcttcctttctatgctcggga |
200 |
Q |
| |
|
||| |||||||||||||||||||| ||||||| ||||||||| |||| |||||| | | ||||||||||||| |||| ||| |||||| | ||| |
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|
| T |
105886 |
ccagtttccataccatgaaccatcggctgtttgtatatcttcaatgaatcgaactgcctcggagatgaaattctctatctctttcttcctatgccctgga |
105787 |
T |
|
| Q |
201 |
tata |
204 |
Q |
| |
|
|||| |
|
|
| T |
105786 |
tata |
105783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 166523 - 166320
Alignment:
| Q |
1 |
atttaacagctttgcgaattgcagcacaattctcataagtcttaccggcggctgttagaccgccaagagcaaaccaagaaccataagtgaagcaaattcc |
100 |
Q |
| |
|
|||||||||| |||||||| | ||||||||| ||||||||| || || |||| || ||| ||||||||||||||| |||||||||| ||||||| ||| |
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|
| T |
166523 |
atttaacagccttgcgaatcgtagcacaattggtataagtctttccagcagctgctaaaccaccaagagcaaaccaacaaccataagtaaagcaaactcc |
166424 |
T |
|
| Q |
101 |
ccaatttccataccatgaaccatcacttgtttgtttatcttcaaggaatttaactgcttttgcaatgaaattctctacttcttcctttctatgctcggga |
200 |
Q |
| |
|
||| |||||||||||||||||||| ||||||| ||||||||| |||| |||||| | | ||||||||||||| |||| ||| |||||| | ||| |
|
|
| T |
166423 |
ccagtttccataccatgaaccatcggctgtttgtatatcttcaatgaatcgaactgcctcggagatgaaattctctatctctttcttcctatgccctgga |
166324 |
T |
|
| Q |
201 |
tata |
204 |
Q |
| |
|
|||| |
|
|
| T |
166323 |
tata |
166320 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 12135908 - 12136111
Alignment:
| Q |
1 |
atttaacagctttgcgaattgcagcacaattctcataagtcttaccggcggctgttagaccgccaagagcaaaccaagaaccataagtgaagcaaattcc |
100 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||||||| || || |||| || ||| ||||| || ||||||||||||||| |||||||||| || |
|
|
| T |
12135908 |
atttaactgctttgcgaatagcagcacaattggtataagtctttccagcagctgctaaaccaccaagtgccaaccaagaaccataaatgaagcaaatacc |
12136007 |
T |
|
| Q |
101 |
ccaatttccataccatgaaccatcacttgtttgtttatcttcaaggaatttaactgcttttgcaatgaaattctctacttcttcctttctatgctcggga |
200 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||| ||| ||| |||||| || ||||| |||| |||| |||| ||| |||||||| ||| |
|
|
| T |
12136008 |
ccaagctccataccatgaaccatcagatgtttgtttatcttctaggtattgaactgcattggcaataaaatcgtctatctctttcttcctatgctctgga |
12136107 |
T |
|
| Q |
201 |
tata |
204 |
Q |
| |
|
|||| |
|
|
| T |
12136108 |
tata |
12136111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 90785 - 90950
Alignment:
| Q |
1 |
atttaacagctttgcgaattgcagcacaattctcataagtcttaccggcggctgttagaccgccaagagcaaaccaagaaccataagtgaagcaaattcc |
100 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||| |||| |||| || || |||| || ||| |||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
90785 |
atttaacagctttacgaatagcatcacaattagtataattcttgccagcagctgctaaaccaccaagagcgaaccaagaaccataagtgaaacaaattcc |
90884 |
T |
|
| Q |
101 |
ccaatttccataccatgaaccatcacttgtttgtttatcttcaaggaatttaactgcttttgcaat |
166 |
Q |
| |
|
|||| |||||||||||||||||||| || ||||| |||||||||||||| |||||| || ||||| |
|
|
| T |
90885 |
ccaacttccataccatgaaccatcagttttttgtgtatcttcaaggaatcgaactgcattggcaat |
90950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 13054429 - 13054260
Alignment:
| Q |
35 |
ataagtcttaccggcggctgttagaccgccaagagcaaaccaagaaccataagtgaagcaaattccccaatttccataccatgaaccatcacttgtttgt |
134 |
Q |
| |
|
||||||||| || || |||| || ||| ||||||||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||| | ||||| |
|
|
| T |
13054429 |
ataagtctttccagcagctgctaaacctccaagagcaaaataagtaccataaatgaagcaaattccccaacttccataccatgaaccatcatctttttgt |
13054330 |
T |
|
| Q |
135 |
ttatcttcaaggaatttaactgcttttgcaatgaaattctctacttcttcctttctatgctcgggatata |
204 |
Q |
| |
|
||||||||| |||| ||||||| || ||||||||||||||| || | ||| |||||||| ||||||| |
|
|
| T |
13054329 |
gtatcttcaatgaatctaactgcattgtcaatgaaattctctatctcgttcttcctatgctctggatata |
13054260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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