View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3318_low_1 (Length: 738)

Name: NF3318_low_1
Description: NF3318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3318_low_1
NF3318_low_1
[»] chr4 (8 HSPs)
chr4 (249-732)||(4644641-4645124)
chr4 (16-252)||(4644305-4644536)
chr4 (419-671)||(42459080-42459333)
chr4 (419-580)||(901593-901754)
chr4 (467-623)||(33319308-33319465)
chr4 (259-322)||(4636615-4636678)
chr4 (476-573)||(30844913-30845010)
chr4 (479-563)||(21118243-21118327)
[»] scaffold0481 (1 HSPs)
scaffold0481 (392-650)||(10508-10767)
[»] chr2 (6 HSPs)
chr2 (400-666)||(32467149-32467415)
chr2 (445-672)||(15342900-15343128)
chr2 (454-573)||(3408401-3408520)
chr2 (467-623)||(21639169-21639323)
chr2 (484-549)||(17362901-17362966)
chr2 (507-560)||(16363165-16363218)
[»] chr7 (10 HSPs)
chr7 (419-572)||(28244420-28244573)
chr7 (466-623)||(20216333-20216491)
chr7 (476-573)||(25783738-25783835)
chr7 (479-561)||(26630475-26630557)
chr7 (487-573)||(31188225-31188311)
chr7 (478-573)||(39973439-39973534)
chr7 (478-573)||(47247688-47247783)
chr7 (484-533)||(4577979-4578028)
chr7 (467-570)||(30712846-30712949)
chr7 (487-573)||(20219314-20219400)
[»] chr5 (8 HSPs)
chr5 (419-580)||(17221686-17221847)
chr5 (536-725)||(32421045-32421232)
chr5 (423-573)||(43453103-43453253)
chr5 (476-560)||(6658717-6658801)
chr5 (487-561)||(38364923-38364997)
chr5 (487-549)||(10014993-10015055)
chr5 (593-623)||(17221861-17221891)
chr5 (507-573)||(20828372-20828438)
[»] chr8 (7 HSPs)
chr8 (419-580)||(8269109-8269269)
chr8 (428-573)||(14090346-14090491)
chr8 (476-573)||(36831834-36831931)
chr8 (467-573)||(42277714-42277820)
chr8 (253-335)||(1798146-1798228)
chr8 (524-573)||(27470687-27470736)
chr8 (454-579)||(43095546-43095671)
[»] chr6 (2 HSPs)
chr6 (474-623)||(25062463-25062613)
chr6 (538-650)||(29603154-29603266)
[»] chr3 (7 HSPs)
chr3 (391-563)||(27991586-27991758)
chr3 (467-623)||(23458483-23458640)
chr3 (467-573)||(51897504-51897610)
chr3 (478-573)||(39348083-39348178)
chr3 (467-570)||(42722970-42723073)
chr3 (476-570)||(8626595-8626689)
chr3 (487-573)||(43722387-43722473)
[»] scaffold0009 (1 HSPs)
scaffold0009 (467-573)||(235377-235483)
[»] scaffold0391 (1 HSPs)
scaffold0391 (476-549)||(457-530)
[»] chr1 (8 HSPs)
chr1 (467-571)||(10885700-10885804)
chr1 (502-572)||(42097082-42097152)
chr1 (487-573)||(50543595-50543681)
chr1 (476-572)||(28793642-28793738)
chr1 (454-573)||(35065625-35065743)
chr1 (502-573)||(43628339-43628410)
chr1 (478-647)||(17999575-17999745)
chr1 (486-573)||(23047431-23047518)


Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 249 - 732
Target Start/End: Original strand, 4644641 - 4645124
Alignment:
Q  249 ctaatctaatatatatgttgatatcagttccattgttgatttgatttttgaatggaaaaacttgaagaattgttagtgctgagattactatgtaaaccac 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4644641 ctaatctaatatatatgttgatatcagttccattgttgatttgatttttgaatggaaaaacttgaagaattgttagtgctgagattactatgtaaaccac 4644740  T
Q  349 cgtgaagtgcacggtgttaatgaaaaaatggatttgatcatcatctcccggatcagcccctaaatgatgaatcatcatctccaccgcctcgtcccatgtc 448  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4644741 cgtgaagtgcacggtgttaaagaaaaaatggatttgatcatcatctcccggatcagcccctaaatgttgaatcatcatctccaccgcctcgtcccatgtc 4644840  T
Q  449 atactctcgtgggataaaagcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagc 548  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||    
T  4644841 atactctcgtgggataaaagcataccatcaatggggagatgcagcaaacacgacacatcatcaagtgtcactatcatctccccaaacaaaagatggaagc 4644940  T
Q  549 tcgatgtctcctcgtgtcacctctctgcaaatacataacacaaccgtggtcaatctggctgtagctggtatcctgtatccactgaacatcggtggctctc 648  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4644941 tcgatgtctcctcgtgtcacctctctgcaaatgcataacacaaccgtggtcaatctggctgtagctggtatcctgcatccactgaacatcggtggctctc 4645040  T
Q  649 agtcattcacgccaccaccatgctgtcattatattagtcttgttttgcttatcatgtatcacgtctatctttttccctttgctt 732  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4645041 agtccttcacgccaccaccatgctgtcataatattagtcttgttttgcttatcatgtatcgcgtctatctttttccctttgctt 4645124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 4644305 - 4644536
Alignment:
Q  16 atattgttgcacattcgggagagattcgcatcctagtggtggcagctcgacggaaaaatggtcaagctg--acataaggcaaatcgcggcgtgaatacta 113  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||||||||||||||||||||||||||     
T  4644305 atattgttgcacattcaggagagattcgcatcctagtggtggcggctcgacggcaaaatggtcaagctgtgacataaggcaaatcgcggcgtgaatactg 4644404  T
Q  114 tggagtatggatagtatcattctcgttggagaagcagcaacacacaatcaatgagttaaatgatgtagagacatatgccacatctcttcaattaaaactc 213  Q
    ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4644405 tgga-------tagtatcattctcgttggagaagcagcaacacacaatcaatgagttaaatgatgtagagacatatcccacatctcttcaattaaaactc 4644497  T
Q  214 acgagtttgcaggttatgtatacaaagaaagagaactaa 252  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  4644498 acgagtttgcaggttatgtaaacaaagaaagagaactaa 4644536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 419 - 671
Target Start/End: Original strand, 42459080 - 42459333
Alignment:
Q  419 atcatcatctccaccgcctcgtcccatgtcatactctcgtgggataaaagcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtca 518  Q
    ||||||||||||||||  ||||||| ||  ||||||| |||||| |||||||| |||||||||| |||| ||| |||||| |||||| ||||||||||||    
T  42459080 atcatcatctccaccgtatcgtcccttgaaatactcttgtgggaaaaaagcatgccatcaatggggagacgcatcaaacatgacacatcatcaagtgtca 42459179  T
Q  519 ctatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctctgcaaatacataacaca-accgtggtcaatctggctgtagctggt 617  Q
    || ||||||||  ||  |||| |||||||||||| ||||||||||| |||||||| |||||| || |||| |   | |||| ||||||||||||| | ||    
T  42459180 ctgtcatctccttaattggaatatggaagctcgaagtctcctcgtggcacctctccgcaaatgcagaacataggtcatggttaatctggctgtagtttgt 42459279  T
Q  618 atcctgtatccactgaacatcggtggctctcagtcattcacgccaccaccatgc 671  Q
    |||||| |  ||   || | ||||||| |||||||  |||||||||||||||||    
T  42459280 atcctgaagtcaagaaataccggtggcactcagtctatcacgccaccaccatgc 42459333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 419 - 580
Target Start/End: Complemental strand, 901754 - 901593
Alignment:
Q  419 atcatcatctccaccgcctcgtcccatgtcatactctcgtgggataaaagcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtca 518  Q
    |||| ||||||||| |  ||||||| ||  |||||||||||||  | |||| | |  ||||||| ||| ||||||||||| |||||| ||||||||||||    
T  901754 atcaccatctccactgtatcgtcccttgaaatactctcgtggggcagaagcttgcagtcaatggggaggtgcagcaaacatgacacatcatcaagtgtca 901655  T
Q  519 ctatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctctgcaaat 580  Q
    || |||||||||||||  |||||||||||||| | ||||| ||||| |||||||||||||||    
T  901654 ctgtcatctccccaaatagaagatggaagctcaaagtctcatcgtgccacctctctgcaaat 901593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 467 - 623
Target Start/End: Original strand, 33319308 - 33319465
Alignment:
Q  467 agcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtc 566  Q
    ||||||||||||||||  ||||||| |||||  |||||| |||| ||||||||| |||||||| || ||||||||||||| ||||||||||||||||| |    
T  33319308 agcataccatcaatgggaagatgcatcaaacgagacacatcatcgagtgtcactgtcatctccgcacacggaagatggaaactcgatgtctcctcgtgcc 33319407  T
Q  567 acctctctgcaaatacataacacaac-cgtggtcaatctggctgtagctggtatcctg 623  Q
    | || ||  ||||| || ||||||||  |  |||||||||| |||||||| |||||||    
T  33319408 atctatccacaaatgcaaaacacaacttgcagtcaatctggttgtagctgctatcctg 33319465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 4636615 - 4636678
Alignment:
Q  259 atatatgttgatatcagttccattgttgatttgatttttgaatggaaaaacttgaagaattgtt 322  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||    
T  4636615 atataagttgatatcatttccattgttgatttgattttggaatggaaaaagttgaagaattgtt 4636678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 476 - 573
Target Start/End: Original strand, 30844913 - 30845010
Alignment:
Q  476 tcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 573  Q
    ||||||| || |||||||||| | | |||| |||||||||| ||| | |||||| |||||||||| |||||||| || ||||||||||| ||| ||||    
T  30844913 tcaatggggatatgcagcaaataggtcacatcatcaagtgtgactgttatctcctcaaacggaaggtggaagctggaagtctcctcgtgccacatctc 30845010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 563
Target Start/End: Complemental strand, 21118327 - 21118243
Alignment:
Q  479 atggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgt 563  Q
    |||| ||||||||||||||| |||||| |||||||||||| | | ||||||  || || || ||||||||| || ||||||||||    
T  21118327 atggggagatgcagcaaacatgacacatcatcaagtgtcattgttatctccttaatcgaaaaatggaagctagacgtctcctcgt 21118243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 392 - 650
Target Start/End: Complemental strand, 10767 - 10508
Alignment:
Q  392 tctcccggatcagcccctaaatgatgaatcatcatctccaccgcctcgtcccatgtcatactctcgtgggataaaagcataccatcaatggagagatgca 491  Q
    |||||||||||||||| |||||| ||||||||||| || |  |||||  ||  |||||| ||||||||||| ||||||||||||||||||| ||||||||    
T  10767 tctcccggatcagcccataaatgttgaatcatcatatcgatagcctccacctttgtcattctctcgtgggacaaaagcataccatcaatggggagatgca 10668  T
Q  492 gcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctctgcaaatacataacacaa 591  Q
    ||||||| |||||| |||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||  |||||||||||||| || |||||||    
T  10667 gcaaacatgacacatcatcaagtgtcactgtcatctcccgaaacgcaagatggaggctcgatgtctcctcgtgcgacctctctgcaaatgcacaacacaa 10568  T
Q  592 -ccgtggtcaatctggctgtagctggtatcctgtatccactgaacatcggtggctctcag 650  Q
     |||||| |||||||| |||||||| ||||||| | ||| |||| |||| | ||||||||    
T  10567 cccgtggccaatctgggtgtagctgctatcctgcaaccattgaagatcgattgctctcag 10508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 2e-51; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 400 - 666
Target Start/End: Original strand, 32467149 - 32467415
Alignment:
Q  400 atcagcccctaaatgatgaatcatcatctccaccgcctcgtcccatgtcatactctcgtgggataaaagcataccatcaatggagagatgcagcaaacac 499  Q
    |||| |||||||||| |||||||| ||||| ||| ||||| ||  ||||||||| |||||| | |||||||||||||||| || |||||||||||||||     
T  32467149 atcatcccctaaatgttgaatcattatctctaccacctcgacctttgtcatactttcgtggaacaaaagcataccatcaagggggagatgcagcaaacat 32467248  T
Q  500 gacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctctgcaaatacataacaca-accgtggt 598  Q
    |||||| |||||||||||||| ||||||||  ||| |||||||||||||||||||| |||||||| |||||||| ||||||||| ||||||  || | ||    
T  32467249 gacacatcatcaagtgtcactgtcatctcctaaaatggaagatggaagctcgatgtatcctcgtgccacctctccgcaaatacagaacacagcccatagt 32467348  T
Q  599 caatctggctgtagctggtatcctgtatccactgaacatcggtggctctcagtcattcacgccaccac 666  Q
     ||||| | |||||||||||| ||| | ||||| || |  |||||||||||||| ||||| |||||||    
T  32467349 taatct-gttgtagctggtattctgcaaccactaaagactggtggctctcagtccttcacaccaccac 32467415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 445 - 672
Target Start/End: Complemental strand, 15343128 - 15342900
Alignment:
Q  445 tgtcatactctcgtgggataaaagcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatgg 544  Q
    |||||||||||| || || |||| || ||||| ||||| ||||||||||||||| |||||| |||| ||| |||| |||||||||| ||| |||||||||    
T  15343128 tgtcatactctcatgtgacaaaaacaaaccattaatggggagatgcagcaaacatgacacatcatcgagtatcacaatcatctcccaaaatggaagatgg 15343029  T
Q  545 aagctcgatgtctcctcgtgtcacctctctgcaaatacataacacaac-cgtggtcaatctggctgtagctggtatcctgtatccactgaacatcggtgg 643  Q
    |||||||||||||||  ||| |||||||| |||||| || ||||||||  ||||||||||||| |||||| |||||||| || | |||||| | ||||||    
T  15343028 aagctcgatgtctccgtgtgccacctctccgcaaatgcagaacacaacatgtggtcaatctggttgtagccggtatcctatagcaactgaagaccggtgg 15342929  T
Q  644 ctctcagtcattcacgccaccaccatgct 672  Q
    ||||||| |  ||||||||||||| ||||    
T  15342928 ctctcagaccatcacgccaccaccgtgct 15342900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 454 - 573
Target Start/End: Original strand, 3408401 - 3408520
Alignment:
Q  454 ctcgtgggataaaagcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgat 553  Q
    ||||||||| |  ||||| |||||||||| || |||||||||| | | |||| | |||||||| ||| ||||||||| ||||||||| |||||||| ||     
T  3408401 ctcgtgggacaggagcatgccatcaatggggatatgcagcaaagaggccacatcgtcaagtgtgactgtcatctcccgaaacggaaggtggaagctggaa 3408500  T
Q  554 gtctcctcgtgtcacctctc 573  Q
    ||||||||||| ||||||||    
T  3408501 gtctcctcgtgccacctctc 3408520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 467 - 623
Target Start/End: Complemental strand, 21639323 - 21639169
Alignment:
Q  467 agcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtc 566  Q
    ||||| || ||||||||||||||||||||||| | |||| |||||||||| ||| | |||||||||||    || |||||||| || ||||||| ||| |    
T  21639323 agcatgccgtcaatggagagatgcagcaaacaggccacatcatcaagtgtgactgttatctccccaaa---taggtggaagctggaagtctccttgtgcc 21639227  T
Q  567 acctctctgcaaatacataacaca-accgtggtcaatctggctgtagctggtatcctg 623  Q
    |||||||  ||||  |||||   | ||| ||||||||| |||||||||||||||||||    
T  21639226 acctctccacaaaggcataaattagaccatggtcaatcaggctgtagctggtatcctg 21639169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 549
Target Start/End: Original strand, 17362901 - 17362966
Alignment:
Q  484 gagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagct 549  Q
    ||||||||||| ||| |||||  |||||||||||||| |||||||||| | | |||||||||||||    
T  17362901 gagatgcagcagacatgacacgtcatcaagtgtcactgtcatctcccccatcagaagatggaagct 17362966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 560
Target Start/End: Complemental strand, 16363218 - 16363165
Alignment:
Q  507 catcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcct 560  Q
    ||||||||||| |||| |||||||||| | ||||||||||||| || |||||||    
T  16363218 catcaagtgtcgctatgatctccccaatcagaagatggaagctagacgtctcct 16363165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 1e-40; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 419 - 572
Target Start/End: Complemental strand, 28244573 - 28244420
Alignment:
Q  419 atcatcatctccaccgcctcgtcccatgtcatactctcgtgggataaaagcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtca 518  Q
    ||||||||||||||||| ||||| | ||  |||||||||||||| |  ||||| |||||||||| || ||||| |||||| |||||| ||||||||||||    
T  28244573 atcatcatctccaccgcatcgtctcttgaaatactctcgtgggacaggagcatgccatcaatggggatatgcaacaaacatgacacatcatcaagtgtca 28244474  T
Q  519 ctatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctct 572  Q
    || ||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  28244473 ctgtcatctccccaaacggaagatggaagctcgaagtctcctcgtgacacctct 28244420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 466 - 623
Target Start/End: Original strand, 20216333 - 20216491
Alignment:
Q  466 aagcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgt 565  Q
    |||||| |||||||||| |||||| |||||||| |||||| |||||||||||| | ||||||||||||||||||| || || ||||| ||||||||||      
T  20216333 aagcatgccatcaatggggagatgaagcaaacaagacacatcatcaagtgtcattgtcatctccccaaacggaaggtgaaaactcgaagtctcctcgtac 20216432  T
Q  566 cacctctctgcaaatacataacaca-accgtggtcaatctggctgtagctggtatcctg 623  Q
    ||||||||  ||||| || ||   | |||||||||||||  |||||||||||| |||||    
T  20216433 cacctctccacaaatgcagaaattagaccgtggtcaatcaagctgtagctggtgtcctg 20216491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 476 - 573
Target Start/End: Original strand, 25783738 - 25783835
Alignment:
Q  476 tcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 573  Q
    ||||||| ||||||||||||||| | |||| |||||||||| ||| ||||||||| |||| |||| |||||||| ||  |||||||||| ||||||||    
T  25783738 tcaatggggagatgcagcaaacatgccacatcatcaagtgtgactgtcatctccctaaacagaaggtggaagctggaattctcctcgtgccacctctc 25783835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 479 - 561
Target Start/End: Original strand, 26630475 - 26630557
Alignment:
Q  479 atggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctc 561  Q
    |||||||||||||||||||| |||||  |||||||||||| | || |||||||||| | || |||||||||||| ||||||||    
T  26630475 atggagagatgcagcaaacaagacacgtcatcaagtgtcattgtcctctccccaaatgaaatatggaagctcgaagtctcctc 26630557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 487 - 573
Target Start/End: Original strand, 31188225 - 31188311
Alignment:
Q  487 atgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 573  Q
    |||||||||| | | |||| |||||||||| ||| ||||||||||||||||||| |||||||| || ||||||| ||| ||||||||    
T  31188225 atgcagcaaagaggccacatcatcaagtgtgactgtcatctccccaaacggaaggtggaagctggaagtctccttgtgccacctctc 31188311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 478 - 573
Target Start/End: Complemental strand, 39973534 - 39973439
Alignment:
Q  478 aatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 573  Q
    ||||| || |||||||||| | | |||| | |||||||| | | ||||||||||||||||||| |||||||| || ||||||||||  ||||||||    
T  39973534 aatggggatatgcagcaaagaggccacatcgtcaagtgtgattgtcatctccccaaacggaaggtggaagctggaagtctcctcgtaccacctctc 39973439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 478 - 573
Target Start/End: Complemental strand, 47247783 - 47247688
Alignment:
Q  478 aatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 573  Q
    ||||| || |||||||||| | | |||| | |||||||| ||| |||||||| |||| ||||| |||||||| || ||||||||||| ||||||||    
T  47247783 aatggggatatgcagcaaagaggccacatcgtcaagtgtgactgtcatctccacaaatggaaggtggaagctggaagtctcctcgtgccacctctc 47247688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 533
Target Start/End: Complemental strand, 4578028 - 4577979
Alignment:
Q  484 gagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaa 533  Q
    |||| |||||||||| |||||| |||||||||||||| ||||||||||||    
T  4578028 gagacgcagcaaacatgacacatcatcaagtgtcactttcatctccccaa 4577979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 570
Target Start/End: Original strand, 30712846 - 30712949
Alignment:
Q  467 agcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtc 566  Q
    ||||| || ||||||| || |||||||||| | | |||| | |||||||| ||| ||| ||||| |||| |||| |||||||| || ||||||||||| |    
T  30712846 agcatgccttcaatggggatatgcagcaaagaggccacatcgtcaagtgtgactgtcacctccctaaactgaaggtggaagctggaagtctcctcgtgcc 30712945  T
Q  567 acct 570  Q
    ||||    
T  30712946 acct 30712949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 487 - 573
Target Start/End: Original strand, 20219314 - 20219400
Alignment:
Q  487 atgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 573  Q
    |||||||||| | | |||| | |||||||| | | |||||||||||||| |||| |||||||| || ||||||| ||| ||||||||    
T  20219314 atgcagcaaataagccacatcgtcaagtgtgattgtcatctccccaaacagaaggtggaagctggaagtctccttgtgccacctctc 20219400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 1e-40; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 419 - 580
Target Start/End: Original strand, 17221686 - 17221847
Alignment:
Q  419 atcatcatctccaccgcctcgtcccatgtcatactctcgtgggataaaagcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtca 518  Q
    ||||||| ||||||||| ||||||| ||  |||||||||||||| |||| ||| |||||||| | ||||||||||||||| |||||| ||||||||||||    
T  17221686 atcatcaactccaccgcatcgtcccttgaaatactctcgtgggacaaaatcatgccatcaatagggagatgcagcaaacaggacacatcatcaagtgtca 17221785  T
Q  519 ctatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctctgcaaat 580  Q
    || ||||||| ||||| ||| ||||||||||||| ||||||||||| |||||||| ||||||    
T  17221786 ctgtcatctcgccaaaaggaggatggaagctcgaagtctcctcgtgccacctctccgcaaat 17221847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 536 - 725
Target Start/End: Complemental strand, 32421232 - 32421045
Alignment:
Q  536 ggaagatggaagctcgatgtctcctcgtgtcacctctctgcaaatacataacacaac-cgtggtcaatctggctgtagctggtatcctgtatccactgaa 634  Q
    ||||||||||||||||||||||||||||| |||||||| | |||  || |||||||| |||||||||| ||| ||||| || |||| || | ||||||||    
T  32421232 ggaagatggaagctcgatgtctcctcgtgccacctctccgtaaaggcagaacacaacacgtggtcaatatggttgtagttgatatcttgcagccactgaa 32421133  T
Q  635 catcggtggctctcagtcattcacgccaccaccatgctgtcattatattagtcttgttttgcttatcatgtatcacgtctatctttttccc 725  Q
     |  ||||||||||||||  ||||||||||||  ||||||||| |   ||| ||||||||| | |||||||||| || ||||||| |||||    
T  32421132 gactggtggctctcagtccatcacgccaccactgtgctgtcatga---tagccttgttttgatcatcatgtatcgcggctatcttcttccc 32421045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 423 - 573
Target Start/End: Original strand, 43453103 - 43453253
Alignment:
Q  423 tcatctccaccgcctcgtcccatgtcatactctcgtgggataaaagcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtcactat 522  Q
    ||||||||||||| | ||| | ||| ||| | |||||||| | |||||| |||| |||   |||||||| |||||| |||||| |||||||||||| | |    
T  43453103 tcatctccaccgcattgtctcttgtaatagtttcgtgggacagaagcatgccattaatttggagatgcaacaaacatgacacatcatcaagtgtcattgt 43453202  T
Q  523 catctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 573  Q
    ||||||||||||||||||||||||||| ||  ||||||| || ||||||||    
T  43453203 catctccccaaacggaagatggaagcttgaaatctcctcatgccacctctc 43453253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 476 - 560
Target Start/End: Complemental strand, 6658801 - 6658717
Alignment:
Q  476 tcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcct 560  Q
    ||||||| || |||||||||| | | |||| |||||||||| ||| |||||||||||||| |||| |||||||| || |||||||    
T  6658801 tcaatggggatatgcagcaaagaggccacatcatcaagtgtgactgtcatctccccaaacagaaggtggaagctggaagtctcct 6658717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 487 - 561
Target Start/End: Complemental strand, 38364997 - 38364923
Alignment:
Q  487 atgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctc 561  Q
    |||||||||| | | |||| |||||||||| ||||||||||||||||| ||||| ||||| || || ||||||||    
T  38364997 atgcagcaaagaggccacatcatcaagtgtgactatcatctccccaaatggaaggtggaatctagaagtctcctc 38364923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 487 - 549
Target Start/End: Complemental strand, 10015055 - 10014993
Alignment:
Q  487 atgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagct 549  Q
    |||||||||| | | |||| |||||||||| ||| ||||||||||||||||||| || |||||    
T  10015055 atgcagcaaagaggccacatcatcaagtgtgactgtcatctccccaaacggaaggtgaaagct 10014993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 593 - 623
Target Start/End: Original strand, 17221861 - 17221891
Alignment:
Q  593 cgtggtcaatctggctgtagctggtatcctg 623  Q
    |||||||||||||||||||||||||||||||    
T  17221861 cgtggtcaatctggctgtagctggtatcctg 17221891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 573
Target Start/End: Original strand, 20828372 - 20828438
Alignment:
Q  507 catcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 573  Q
    |||||||||| ||| ||| |||||| |||||||| ||||| || || ||||||||||| ||||||||    
T  20828372 catcaagtgtgactgtcacctccccgaacggaaggtggaacctggaagtctcctcgtgccacctctc 20828438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 6e-36; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 419 - 580
Target Start/End: Complemental strand, 8269269 - 8269109
Alignment:
Q  419 atcatcatctccaccgcctcgtcccatgtcatactctcgtgggataaaagcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtca 518  Q
    ||||||||||||||||| | ||||| || |||||||||||| || |||| ||||||||||||||  ||||| |||||||| | |||| ||| ||||||||    
T  8269269 atcatcatctccaccgcattgtcccttgccatactctcgtgtgacaaaaacataccatcaatggtaagatggagcaaacatg-cacatcattaagtgtca 8269171  T
Q  519 ctatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctctgcaaat 580  Q
    || ||||||||| ||| |||||||||||||| |||||||||||||| |||||||| ||||||    
T  8269170 ctgtcatctcccgaaatggaagatggaagcttgatgtctcctcgtgccacctctccgcaaat 8269109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 428 - 573
Target Start/End: Original strand, 14090346 - 14090491
Alignment:
Q  428 tccaccgcctcgtcccatgtcatactctcgtgggataaaagcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatct 527  Q
    |||||||| ||||||||||| ||| |||||||||| | |||||| |||||||||| ||||||||||||||| |||||| |||||||||||||| |||||     
T  14090346 tccaccgcgtcgtcccatgtgatagtctcgtgggagagaagcatgccatcaatggggagatgcagcaaacatgacacatcatcaagtgtcactgtcatcc 14090445  T
Q  528 ccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 573  Q
    |||| || | ||| ||||| ||||| ||||||||||||||||||||    
T  14090446 cccctaatgaaaggtggaaactcgaagtctcctcgtgtcacctctc 14090491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 476 - 573
Target Start/End: Complemental strand, 36831931 - 36831834
Alignment:
Q  476 tcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 573  Q
    ||||||| || |||||||||| | | |||| |||||||||| ||| ||||||||||||||||||| |||||||| || ||||||||||| ||||||||    
T  36831931 tcaatggggatatgcagcaaagaggccacatcatcaagtgtgactgtcatctccccaaacggaaggtggaagctggaagtctcctcgtgccacctctc 36831834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 467 - 573
Target Start/End: Complemental strand, 42277820 - 42277714
Alignment:
Q  467 agcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtc 566  Q
    ||||| |||||||||  || ||||| |||| | | |||| |||||||||| ||| ||||||||||||||||||| |||||| | || ||||||||||| |    
T  42277820 agcatgccatcaatgcggatatgcatcaaagaggtcacatcatcaagtgtgactgtcatctccccaaacggaaggtggaagttggaagtctcctcgtgcc 42277721  T
Q  567 acctctc 573  Q
    |||||||    
T  42277720 acctctc 42277714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 1798146 - 1798228
Alignment:
Q  253 tctaatatatatgttgatatcagttccattgttgatttgatttttgaatggaaaaacttgaagaattgttagtgctgagatta 335  Q
    |||||||||||  ||||||||| |||||| ||||||||||| ||||||||   ||| |||||||||| | |||||||||||||    
T  1798146 tctaatatataatttgatatcaattccatggttgatttgatatttgaatgaggaaagttgaagaattatgagtgctgagatta 1798228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 524 - 573
Target Start/End: Original strand, 27470687 - 27470736
Alignment:
Q  524 atctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 573  Q
    ||||||||||||||||| |||||||| || ||||||||||||||||||||    
T  27470687 atctccccaaacggaaggtggaagctggaagtctcctcgtgtcacctctc 27470736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 579
Target Start/End: Complemental strand, 43095671 - 43095546
Alignment:
Q  454 ctcgtgggataaaagcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgat 553  Q
    ||||||||| |  ||||| || ||||||| || |||||||||| | | |||| | |||||||| ||| | |||||||||||  |||  |||||||| ||     
T  43095671 ctcgtgggacaggagcatgccgtcaatggggatatgcagcaaagaggccacatcgtcaagtgtgactgttatctccccaaatagaaagtggaagctggaa 43095572  T
Q  554 gtctcctcgtgtcacctctctgcaaa 579  Q
    |||||||| || |||||||| |||||    
T  43095571 gtctcctcatgccacctctccgcaaa 43095546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 474 - 623
Target Start/End: Original strand, 25062463 - 25062613
Alignment:
Q  474 catcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 573  Q
    |||||||||||||||| |||||||| |||||| |||||||||||||| |||||| |||||||| ||||||||||||||| ||||||||||||||||||||    
T  25062463 catcaatggagagatgaagcaaacatgacacatcatcaagtgtcactgtcatcttcccaaacgaaagatggaagctcgaagtctcctcgtgtcacctctc 25062562  T
Q  574 tgcaaatacataacaca-accgtggtcaatctggctgtagctggtatcctg 623  Q
       |||| || |   || ||||||||||||||||| ||||||| |||||||    
T  25062563 cataaatgcagatagcagaccgtggtcaatctggcagtagctgatatcctg 25062613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 538 - 650
Target Start/End: Original strand, 29603154 - 29603266
Alignment:
Q  538 aagatggaagctcgatgtctcctcgtgtcacctctctgcaaatacataacacaacc-gtggtcaatctggctgtagctggtatcctgtatccactgaaca 636  Q
    |||||| ||| |||||||||||| ||| || |||||||||| | || || ||| || |||||||||||||| ||||||||||||||| | ||||| || |    
T  29603154 aagatgaaagatcgatgtctccttgtgccatctctctgcaa-tgcagaagacagcccgtggtcaatctggcagtagctggtatcctgcagccactaaaga 29603252  T
Q  637 tcggtggctctcag 650  Q
     |||| ||||||||    
T  29603253 ccggtagctctcag 29603266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 6e-33; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 391 - 563
Target Start/End: Original strand, 27991586 - 27991758
Alignment:
Q  391 atctcccggatcagcccctaaatgatgaatcatcatctccaccgcctcgtcccatgtcatactctcgtgggataaaagcataccatcaatggagagatgc 490  Q
    ||||||| ||||| |||||||||| | |||||||||||| ||  | ||||||| |||||||| ||||||||| || | ||| |||||||||| ||||| |    
T  27991586 atctccctgatcaacccctaaatgctcaatcatcatctctacaacatcgtcccttgtcataccctcgtgggacaacaacatgccatcaatggggagatcc 27991685  T
Q  491 agcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgt 563  Q
    |||||||| |||||| |||||||||||||  ||||||||  ||| ||||||||||||||||| |||| |||||    
T  27991686 agcaaacatgacacatcatcaagtgtcaccgtcatctccgtaaatggaagatggaagctcgaagtcttctcgt 27991758  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 467 - 623
Target Start/End: Complemental strand, 23458640 - 23458483
Alignment:
Q  467 agcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtc 566  Q
    |||||||| || |||| ||||||||||||||| |||||| |||| |||| ||||||||| ||||||||||||||||| ||| |||||||||||||||| |    
T  23458640 agcataccctcgatggcgagatgcagcaaacatgacacatcatccagtgccactatcatatccccaaacggaagatgaaagttcgatgtctcctcgtgcc 23458541  T
Q  567 acctctctgcaaatacataacaca-accgtggtcaatctggctgtagctggtatcctg 623  Q
    | |||||  ||| | || |||| |  ||||| |||||||||||||||||| |||||||    
T  23458540 atctctccacaattgcagaacaaagcccgtgttcaatctggctgtagctgatatcctg 23458483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 467 - 573
Target Start/End: Complemental strand, 51897610 - 51897504
Alignment:
Q  467 agcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtc 566  Q
    ||||| || ||||||| || |||||||||| | | |||| |||||||||| | | ||||||||||||||||||| |||||||| || ||||||||||| |    
T  51897610 agcatgccgtcaatggggatatgcagcaaagaggccacatcatcaagtgtgattgtcatctccccaaacggaaggtggaagctggaagtctcctcgtgcc 51897511  T
Q  567 acctctc 573  Q
    |||||||    
T  51897510 acctctc 51897504  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 478 - 573
Target Start/End: Complemental strand, 39348178 - 39348083
Alignment:
Q  478 aatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 573  Q
    ||||| || |||||||||| | | |||| |||||||||| | | ||||||||||||||||||| |||||||| || || |||||||| ||||||||    
T  39348178 aatggggatatgcagcaaagaggccacatcatcaagtgtgattgtcatctccccaaacggaaggtggaagctggaagtatcctcgtgccacctctc 39348083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 467 - 570
Target Start/End: Complemental strand, 42723073 - 42722970
Alignment:
Q  467 agcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtc 566  Q
    ||||| |||||||||  || |||||||||| | | |||| |||||||||| ||| |||| |||||||||| ||| |||||||| || ||||||||||| |    
T  42723073 agcatgccatcaatgaggatatgcagcaaagaggccacatcatcaagtgtgactgtcatttccccaaacgaaaggtggaagctggaagtctcctcgtgcc 42722974  T
Q  567 acct 570  Q
    ||||    
T  42722973 acct 42722970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 476 - 570
Target Start/End: Original strand, 8626595 - 8626689
Alignment:
Q  476 tcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacct 570  Q
    ||||||| || |||||||||| | | || | | |||||||| ||| ||||||||||||||||||| |||||||| || ||||||||||| |||||    
T  8626595 tcaatggggatatgcagcaaagaggccatatcgtcaagtgtgactgtcatctccccaaacggaaggtggaagctggaagtctcctcgtgccacct 8626689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 487 - 573
Target Start/End: Complemental strand, 43722473 - 43722387
Alignment:
Q  487 atgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 573  Q
    |||||||||| | | |||| |||||||||  ||| ||||||||| |||| |||| |||||||| || ||||||||||| ||||||||    
T  43722473 atgcagcaaagaggccacatcatcaagtgagactgtcatctccctaaacagaaggtggaagctggaagtctcctcgtgccacctctc 43722387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 467 - 573
Target Start/End: Complemental strand, 235483 - 235377
Alignment:
Q  467 agcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtc 566  Q
    ||||| || ||||||| ||||||||||||||| | |||| |||||||||| | | ||||||||||||| ||||| |||||||| || |||| |||||| |    
T  235483 agcatgccgtcaatggggagatgcagcaaacaggccacatcatcaagtgtgaatgtcatctccccaaatggaaggtggaagctggaagtctactcgtgcc 235384  T
Q  567 acctctc 573  Q
    |||||||    
T  235383 acctctc 235377  T

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Target: scaffold0391 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 476 - 549
Target Start/End: Original strand, 457 - 530
Alignment:
Q  476 tcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagct 549  Q
    ||||||||||||||||||| ||| |||| | | |||||||||||||||||||||| || |||||||||||||||    
T  457 tcaatggagagatgcagcagacatgacaaatcgtcaagtgtcactatcatctcccaaatcggaagatggaagct 530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 467 - 571
Target Start/End: Complemental strand, 10885804 - 10885700
Alignment:
Q  467 agcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtc 566  Q
    ||||| |||||||||| || |||||||||| | | |||| |||||||||| ||| |||| |||||||| ||||| |||||||| || ||||||||||| |    
T  10885804 agcatgccatcaatggggatatgcagcaaagaggccacatcatcaagtgtgactttcatttccccaaatggaagctggaagctggaagtctcctcgtgcc 10885705  T
Q  567 acctc 571  Q
    |||||    
T  10885704 acctc 10885700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 502 - 572
Target Start/End: Original strand, 42097082 - 42097152
Alignment:
Q  502 cacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctct 572  Q
    |||| |||||||||| ||| ||||||||| ||||||||| |||||||| || |||||||||||||||||||    
T  42097082 cacatcatcaagtgtgactgtcatctccctaaacggaaggtggaagctggaagtctcctcgtgtcacctct 42097152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 487 - 573
Target Start/End: Complemental strand, 50543681 - 50543595
Alignment:
Q  487 atgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 573  Q
    |||||||||| | | |||| | |||||||| ||| ||||||||||||||||||| |||||||| || ||||||||||| ||||||||    
T  50543681 atgcagcaaagaggccacatcgtcaagtgtgactgtcatctccccaaacggaaggtggaagctggaagtctcctcgtgccacctctc 50543595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 476 - 572
Target Start/End: Original strand, 28793642 - 28793738
Alignment:
Q  476 tcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctct 572  Q
    ||||||| || ||||| |||| | | |||| |||||||||| ||| ||||||||||||| ||||| |||||||| || ||||||||||| |||||||    
T  28793642 tcaatggggatatgcaacaaagaggccacatcatcaagtgtgactgtcatctccccaaatggaaggtggaagctggaagtctcctcgtgccacctct 28793738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 454 - 573
Target Start/End: Complemental strand, 35065743 - 35065625
Alignment:
Q  454 ctcgtgggataaaagcataccatcaatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgat 553  Q
    ||||||||| || ||||| || |||||||||| |||||||||| | | |||| ||||||| || | | |||||||||||||| |||| |||||| | ||     
T  35065743 ctcgtgggacaagagcatgccttcaatggagatatgcagcaaagaggccacatcatcaag-gtgattgtcatctccccaaaccgaaggtggaagttggaa 35065645  T
Q  554 gtctcctcgtgtcacctctc 573  Q
    ||||||||||| ||||||||    
T  35065644 gtctcctcgtgccacctctc 35065625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 502 - 573
Target Start/End: Original strand, 43628339 - 43628410
Alignment:
Q  502 cacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 573  Q
    |||| |||||||||| ||| ||||||||||||||||||| |||||| | || ||||||||||| ||||||||    
T  43628339 cacatcatcaagtgtgactgtcatctccccaaacggaaggtggaaggtggaagtctcctcgtgccacctctc 43628410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 478 - 647
Target Start/End: Original strand, 17999575 - 17999745
Alignment:
Q  478 aatggagagatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctctgca 577  Q
    ||||| ||||||||||| ||  |||||| ||| |||||||| |||| |||||||| | |||||||| ||||| |||||||| | ||  || |||||  ||    
T  17999575 aatggggagatgcagcagactggacacatcattaagtgtcattatcttctccccatatggaagatgaaagcttgatgtctcttagtaacatctctcaaca 17999674  T
Q  578 aatacataacacaac-cgtggtcaatctggctgtagctggtatcctgtatccactgaacatcggtggctct 647  Q
    || ||| |||||| | |||||||||| || |||||| |||||||||  | |||||||| |  |||||||||    
T  17999675 aagacaaaacacagctcgtggtcaatttgactgtagttggtatcctacaaccactgaagacaggtggctct 17999745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 486 - 573
Target Start/End: Complemental strand, 23047518 - 23047431
Alignment:
Q  486 gatgcagcaaacacgacacaacatcaagtgtcactatcatctccccaaacggaagatggaagctcgatgtctcctcgtgtcacctctc 573  Q
    |||||| || ||| |||||| || ||| ||||||| |||||||||||| || |||| ||||||| ||||||| ||||||||| |||||    
T  23047518 gatgcatcagacatgacacaccaacaaatgtcactctcatctccccaatcgaaagacggaagctagatgtcttctcgtgtcatctctc 23047431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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