View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3318_low_13 (Length: 213)
Name: NF3318_low_13
Description: NF3318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3318_low_13 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 29234375 - 29234523
Alignment:
| Q |
44 |
gtcaaaattaaaggaaggaaaacaatcataaaatcattatatgttttcgtcacctttatttcaacaatcataataggaaatgaatatgcaa---gattta |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29234375 |
gtcaaaattaaaggaaggaaaacaatcataaaatcattatatgttttcgtcaccttcatttcaacaatcataataggaaatgaatatgcaagatgattta |
29234474 |
T |
|
| Q |
141 |
taatgaaatttatataataaaaacaaaagtacacacttcttattttaaa |
189 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29234475 |
taataaaatttatataataaaaacaaaagtacacacttcttattttaaa |
29234523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 29234320 - 29234357
Alignment:
| Q |
8 |
aagcaaaggaaaacaatcgtaaatcatcttctatgtgt |
45 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29234320 |
aagcaaagaaaaacaatcgtaaatcatcttctatgtgt |
29234357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 49114218 - 49114185
Alignment:
| Q |
180 |
ttattttaaaggcaaaattacacaattagtccct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
49114218 |
ttattttaaaggcaaaattacacaattagtccct |
49114185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 18916981 - 18916947
Alignment:
| Q |
179 |
cttattttaaaggcaaaattacacaattagtccct |
213 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18916981 |
cttattttaaaggcaaaattacataattagtccct |
18916947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 33369500 - 33369532
Alignment:
| Q |
181 |
tattttaaaggcaaaattacacaattagtccct |
213 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
33369500 |
tattttataggcaaaattacacaattagtccct |
33369532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University