View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3318_low_5 (Length: 369)

Name: NF3318_low_5
Description: NF3318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3318_low_5
NF3318_low_5
[»] chr2 (1 HSPs)
chr2 (64-359)||(13014328-13014624)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 64 - 359
Target Start/End: Complemental strand, 13014624 - 13014328
Alignment:
Q  64 aagtgtacaattattgagagaaaaattgtctgcgcgaaactcgtgtgatatatatttaagtaaaattatggaaaaagccagatcataaaaagagtaacat 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13014624 aagtgtacaattattgagagaaaaattgtctgcgcgaaactcgtgtgatatatatttaagtaaaattatggaaaaagccagatcataaaaagactaacat 13014525  T
Q  164 acacacacacctacctctccaaatcaagttcatattttattatattttccccatccatctaatctaaccaacaccaccaacaacacgagagagaaag--- 260  Q
    ||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||       
T  13014524 acac--acacctacctctccaaatcaacttcatattttattatattttccccatccatctaatctaaccaacaccaacaacaacacgagagagaaagaaa 13014427  T
Q  261 nnnnnnnngaaggtaaaaattgtactgctaactaccaccactctcgccttatatatattcctcttcattttcatctcttccactcactcttcttctctg 359  Q
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13014426 gaaaaaaagaaggtaaaaattgtactgctaactaccaccactctcgccttatatatattcctcttcattttcatctctcccactcactcttcttctctg 13014328  T

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