View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3318_low_6 (Length: 299)

Name: NF3318_low_6
Description: NF3318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3318_low_6
NF3318_low_6
[»] chr1 (16 HSPs)
chr1 (32-285)||(11410280-11410534)
chr1 (1-42)||(23057072-23057113)
chr1 (1-41)||(23061373-23061413)
chr1 (1-37)||(50239276-50239312)
chr1 (1-35)||(26010943-26010977)
chr1 (1-35)||(51977859-51977893)
chr1 (1-37)||(2621050-2621086)
chr1 (1-36)||(37499113-37499148)
chr1 (1-39)||(6519984-6520021)
chr1 (1-35)||(33098706-33098740)
chr1 (3-36)||(632648-632681)
chr1 (1-34)||(2247416-2247449)
chr1 (1-38)||(5956524-5956561)
chr1 (1-38)||(35305523-35305560)
chr1 (1-37)||(921841-921877)
chr1 (1-37)||(51985306-51985342)
[»] scaffold0625 (1 HSPs)
scaffold0625 (1-43)||(6259-6301)
[»] chr7 (12 HSPs)
chr7 (1-43)||(18990459-18990501)
chr7 (1-43)||(28327438-28327480)
chr7 (1-38)||(30936092-30936129)
chr7 (1-37)||(34118841-34118877)
chr7 (1-38)||(41913094-41913131)
chr7 (1-36)||(27956656-27956691)
chr7 (1-36)||(42711300-42711335)
chr7 (1-36)||(45857475-45857510)
chr7 (1-43)||(21699285-21699327)
chr7 (1-30)||(20438822-20438851)
chr7 (1-38)||(30317560-30317597)
chr7 (1-37)||(43750446-43750482)
[»] chr6 (7 HSPs)
chr6 (1-48)||(2259275-2259322)
chr6 (1-39)||(6848885-6848923)
chr6 (1-35)||(15383204-15383238)
chr6 (1-36)||(34195879-34195914)
chr6 (1-38)||(17545974-17546011)
chr6 (1-38)||(32833772-32833809)
chr6 (1-37)||(8376019-8376055)
[»] chr3 (14 HSPs)
chr3 (1-40)||(27647851-27647890)
chr3 (1-36)||(11140616-11140651)
chr3 (1-35)||(42067950-42067984)
chr3 (1-38)||(25592010-25592047)
chr3 (1-34)||(52082045-52082078)
chr3 (8-40)||(876218-876250)
chr3 (1-37)||(4663145-4663181)
chr3 (1-41)||(21288808-21288848)
chr3 (1-36)||(19547860-19547895)
chr3 (1-36)||(29786533-29786568)
chr3 (1-39)||(42363925-42363963)
chr3 (1-39)||(44365980-44366018)
chr3 (1-38)||(788471-788508)
chr3 (1-38)||(29806380-29806417)
[»] chr8 (19 HSPs)
chr8 (1-39)||(39170995-39171033)
chr8 (1-38)||(34332482-34332519)
chr8 (1-36)||(17642444-17642479)
chr8 (1-35)||(23286936-23286970)
chr8 (1-39)||(28090561-28090599)
chr8 (1-39)||(43485048-43485086)
chr8 (1-38)||(29460006-29460043)
chr8 (1-38)||(29773815-29773852)
chr8 (1-37)||(946342-946378)
chr8 (1-37)||(37466054-37466090)
chr8 (1-37)||(44935269-44935305)
chr8 (1-36)||(23274995-23275030)
chr8 (1-47)||(16323929-16323975)
chr8 (4-33)||(13482912-13482941)
chr8 (1-33)||(2273380-2273412)
chr8 (1-37)||(15725889-15725925)
chr8 (1-37)||(26439508-26439544)
chr8 (1-37)||(31158925-31158961)
chr8 (1-37)||(37511460-37511496)
[»] chr4 (11 HSPs)
chr4 (1-38)||(11109594-11109631)
chr4 (1-40)||(48578903-48578942)
chr4 (1-34)||(31908813-31908846)
chr4 (1-38)||(51435810-51435847)
chr4 (1-37)||(31681557-31681593)
chr4 (1-37)||(55722848-55722884)
chr4 (1-33)||(56361318-56361350)
chr4 (1-36)||(28038056-28038091)
chr4 (1-36)||(53695386-53695421)
chr4 (1-35)||(9858620-9858654)
chr4 (1-37)||(38836221-38836257)
[»] chr2 (11 HSPs)
chr2 (1-37)||(5389201-5389237)
chr2 (1-37)||(34665941-34665977)
chr2 (1-35)||(1353877-1353911)
chr2 (1-35)||(37909729-37909763)
chr2 (1-38)||(37083582-37083619)
chr2 (1-37)||(14532823-14532859)
chr2 (1-40)||(4673597-4673636)
chr2 (1-40)||(34438183-34438222)
chr2 (1-36)||(43690022-43690057)
chr2 (1-34)||(11227998-11228031)
chr2 (1-38)||(11598486-11598523)
[»] chr5 (9 HSPs)
chr5 (1-38)||(14967602-14967639)
chr5 (1-37)||(13091284-13091320)
chr5 (1-36)||(13410913-13410948)
chr5 (1-36)||(32467414-32467449)
chr5 (1-35)||(3425090-3425124)
chr5 (1-30)||(2318431-2318460)
chr5 (1-38)||(12362355-12362392)
chr5 (1-38)||(28332493-28332530)
chr5 (1-45)||(34303019-34303063)
[»] scaffold0283 (1 HSPs)
scaffold0283 (1-37)||(6609-6645)
[»] scaffold0077 (2 HSPs)
scaffold0077 (1-37)||(48380-48416)
scaffold0077 (1-37)||(58135-58171)
[»] scaffold0113 (1 HSPs)
scaffold0113 (1-44)||(29616-29659)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 32 - 285
Target Start/End: Original strand, 11410280 - 11410534
Alignment:
Q  32 ttcccttaattaaatcccatgcaaaattcgtttt-ttctgtctgcatgtaatgtatccaggccacgcagaaccattaattgctaacactttaagaaacta 130  Q
    |||| |||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11410280 ttccattaattgaatcccatgcaaaattagtttttttctgtctgcatgtaatgtatccaggccacgcagaaccattaattgctaacactttaagaaacta 11410379  T
Q  131 taactaagattaccatgaccacacacacacgacacgcaaacatgcacaaccattaatccacttttggaattttgagtttaggctcaatgtggacatatgt 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11410380 taactaagattaccatgaccacacacacacgacacgcaaacatgcacaaccataaatccacttttggaattttgagtttaggctcaatgtggacatatgt 11410479  T
Q  231 gatgtgaggtaagtttagccctatttgtttacttcgtgtgcactatgttcatctc 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11410480 gatgtgaggtaagtttagccctatttgtttacttcgtgtgcactatgttcatctc 11410534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23057072 - 23057113
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcccttaatt 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  23057072 tacaccttaatttgcgggtgtaccgtagaagttcccttaatt 23057113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 23061373 - 23061413
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcccttaat 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  23061373 tacaccttaatttgcgggtgtaccgtagaagttcccttaat 23061413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 50239312 - 50239276
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  50239312 tacaccttaatttgcgggtgtaccgtagaagttccct 50239276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26010977 - 26010943
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  26010977 tacaccttaatttgcgggtgtaccgtagaagttcc 26010943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 51977893 - 51977859
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  51977893 tacaccttaatttgcgggtgtaccgtagaagttcc 51977859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 2621050 - 2621086
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    ||||||||||||||| |||||||||||||||||||||    
T  2621050 tacaccttaatttgcaggtgtaccgtagaagttccct 2621086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 37499113 - 37499148
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  37499113 tacaccttaatttgcgggtgtaccatagaagttccc 37499148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 6520021 - 6519984
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctta 39  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  6520021 tacaccttaatttgcgg-tgtaccgtagaagttccctta 6519984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 33098740 - 33098706
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcc 35  Q
    |||||||||||||| ||||||||||||||||||||    
T  33098740 tacaccttaatttgtgggtgtaccgtagaagttcc 33098706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 632681 - 632648
Alignment:
Q  3 caccttaatttgcgggtgtaccgtagaagttccc 36  Q
    ||||||||||||||||||| ||||||||||||||    
T  632681 caccttaatttgcgggtgtgccgtagaagttccc 632648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 2247416 - 2247449
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttc 34  Q
    |||||||||||||| |||||||||||||||||||    
T  2247416 tacaccttaatttgtgggtgtaccgtagaagttc 2247449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5956561 - 5956524
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctt 38  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  5956561 tacagcttaatttgtgggtgtaccgtagaagttccctt 5956524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35305523 - 35305560
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctt 38  Q
    ||||||||||||| || |||||||||||||||||||||    
T  35305523 tacaccttaatttacgagtgtaccgtagaagttccctt 35305560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 921877 - 921841
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  921877 tacaccttaatttgcaggtgtaccatagaagttccct 921841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 51985306 - 51985342
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    |||||| |||||||| |||||||||||||||||||||    
T  51985306 tacaccgtaatttgcaggtgtaccgtagaagttccct 51985342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0625 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 6301 - 6259
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcccttaatta 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6301 tacaccttaatttgcgggtgtaccgtagaagttcccttaatta 6259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18990459 - 18990501
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcccttaatta 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18990459 tacaccttaatttgcgggtgtaccgtagaagttcccttaatta 18990501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 28327438 - 28327480
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcccttaatta 43  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  28327438 tacagcttaatttgcgggtgtaccgtagaagttcccttaatta 28327480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30936129 - 30936092
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30936129 tacaccttaatttgcgggtgtaccgtagaagttccctt 30936092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34118841 - 34118877
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  34118841 tacaccttaatttgcgggtgtaccgtagaagttccct 34118877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41913131 - 41913094
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctt 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  41913131 tacaccttaatttgcgggtgtaccatagaagttccctt 41913094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 27956656 - 27956691
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  27956656 tacaccttaatttgcgggtgtaccatagaagttccc 27956691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 42711300 - 42711335
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccc 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  42711300 tacaccttaatttgcggatgtaccgtagaagttccc 42711335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 45857510 - 45857475
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccc 36  Q
    ||||||||||||||||||||||||||| ||||||||    
T  45857510 tacaccttaatttgcgggtgtaccgtaaaagttccc 45857475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 21699327 - 21699285
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcccttaatta 43  Q
    |||||||||||||||| ||||||| ||||| ||||||||||||    
T  21699327 tacaccttaatttgcgagtgtaccatagaaattcccttaatta 21699285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 20438851 - 20438822
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaa 30  Q
    ||||||||||||||||||||||||||||||    
T  20438851 tacaccttaatttgcgggtgtaccgtagaa 20438822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30317560 - 30317597
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctt 38  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  30317560 tacaccttaatttgcaggtgtaccgtagaaattccctt 30317597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43750446 - 43750482
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  43750446 tacaccttaatttgcaggtgtcccgtagaagttccct 43750482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2259275 - 2259322
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcccttaattaaatcc 48  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||    
T  2259275 tacaccttaatttgcgggtgtaccgtagaagttcccttattttaatcc 2259322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6848885 - 6848923
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctta 39  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  6848885 tacaccttaatttacgggtgtaccgtagaagttccctta 6848923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 15383238 - 15383204
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  15383238 tacaccttaatttgcgggtgtaccgtagaagttcc 15383204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 34195914 - 34195879
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccc 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  34195914 tacaccttaatttgcggatgtaccgtagaagttccc 34195879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17545974 - 17546011
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctt 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  17545974 tacaccttaatttgcgggtgtactatagaagttccctt 17546011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32833809 - 32833772
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctt 38  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  32833809 tacaccgtaatttgcggatgtaccgtagaagttccctt 32833772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8376055 - 8376019
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  8376055 tacaccttaatttgtgggtgtaccgtagaagtcccct 8376019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 27647851 - 27647890
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcccttaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27647851 tacaccttaatttgcgggtgtaccgtagaagttcccttaa 27647890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 11140616 - 11140651
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  11140616 tacaccttaatttgcgggtgtaccgtagaagttccc 11140651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42067950 - 42067984
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  42067950 tacaccttaatttgcgggtgtaccgtagaagttcc 42067984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 25592047 - 25592010
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctt 38  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  25592047 tacaccttaatttacgggtgtaccgtagaagttccctt 25592010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 52082078 - 52082045
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  52082078 tacaccttaatttgcgggtgtaccgtagaagttc 52082045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 876250 - 876218
Alignment:
Q  8 taatttgcgggtgtaccgtagaagttcccttaa 40  Q
    |||||||||||||||||||||||||||||||||    
T  876250 taatttgcgggtgtaccgtagaagttcccttaa 876218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4663181 - 4663145
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    ||||||||||||||||| |||||||||||||||||||    
T  4663181 tacaccttaatttgcggatgtaccgtagaagttccct 4663145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 21288848 - 21288808
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcccttaat 41  Q
    |||||||||||||||||||||||||||||| ||||| ||||    
T  21288848 tacaccttaatttgcgggtgtaccgtagaaattcccctaat 21288808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 19547860 - 19547895
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccc 36  Q
    |||||||||||||| |||||||||||||||||||||    
T  19547860 tacaccttaatttgtgggtgtaccgtagaagttccc 19547895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 29786568 - 29786533
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccc 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  29786568 tacaccttaatttgcaggtgtaccgtagaagttccc 29786533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 42363963 - 42363925
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctta 39  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  42363963 tacaccgtaatttgcaggtgtaccgtagaagttccctta 42363925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 44365980 - 44366018
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctta 39  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  44365980 tacaccttaatttacgggtgtaccatagaagttccctta 44366018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 788508 - 788471
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctt 38  Q
    ||||||||||||||||||||||||||| || |||||||    
T  788508 tacaccttaatttgcgggtgtaccgtaaaaattccctt 788471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29806380 - 29806417
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctt 38  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  29806380 tacacctcaatttgcgagtgtaccgtagaagttccctt 29806417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 39171033 - 39170995
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctta 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39171033 tacaccttaatttgcgggtgtaccgtagaagttccctta 39170995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34332482 - 34332519
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34332482 tacaccttaatttgcgggtgtaccgtagaagttccctt 34332519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 17642444 - 17642479
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  17642444 tacaccttaatttgcgggtgtaccgtagaagttccc 17642479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 23286936 - 23286970
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  23286936 tacaccttaatttgcgggtgtaccgtagaagttcc 23286970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28090561 - 28090599
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctta 39  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  28090561 tacaccttaaattgcgggtgtaccgtagaagttccctta 28090599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 43485086 - 43485048
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctta 39  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  43485086 tacaccttaatttgcgggtgtaccgtagaagttctctta 43485048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29460006 - 29460043
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctt 38  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  29460006 tacaccttaatttgcaggtgtaccgtagaagttccctt 29460043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29773815 - 29773852
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctt 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  29773815 tacaccttaaattgcgggtgtaccgtagaagttccctt 29773852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 946342 - 946378
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    |||||| ||||||||||||||||||||||||||||||    
T  946342 tacaccgtaatttgcgggtgtaccgtagaagttccct 946378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37466054 - 37466090
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    ||||||||||||||||| |||||||||||||||||||    
T  37466054 tacaccttaatttgcggttgtaccgtagaagttccct 37466090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 44935269 - 44935305
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    |||||||||| ||||||||||||||||||||||||||    
T  44935269 tacaccttaaattgcgggtgtaccgtagaagttccct 44935305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 23274995 - 23275030
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccc 36  Q
    |||||||||||||||||||||| |||||||||||||    
T  23274995 tacaccttaatttgcgggtgtatcgtagaagttccc 23275030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 16323929 - 16323975
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcccttaattaaatc 47  Q
    ||||||||||||||| |||||||||| ||| | ||||||||||||||    
T  16323929 tacaccttaatttgcaggtgtaccgtggaaatccccttaattaaatc 16323975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 33
Target Start/End: Complemental strand, 13482941 - 13482912
Alignment:
Q  4 accttaatttgcgggtgtaccgtagaagtt 33  Q
    ||||||||||||||||||||||||||||||    
T  13482941 accttaatttgcgggtgtaccgtagaagtt 13482912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2273380 - 2273412
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagtt 33  Q
    ||||||||||||||| |||||||||||||||||    
T  2273380 tacaccttaatttgcaggtgtaccgtagaagtt 2273412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 15725925 - 15725889
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    |||||| |||||||| |||||||||||||||||||||    
T  15725925 tacaccgtaatttgcaggtgtaccgtagaagttccct 15725889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26439544 - 26439508
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    |||||||||||||| || |||||||||||||||||||    
T  26439544 tacaccttaatttgtggatgtaccgtagaagttccct 26439508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31158925 - 31158961
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  31158925 tacacctcaatttgcgagtgtaccgtagaagttccct 31158961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37511460 - 37511496
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  37511460 tacaccttaatttacggatgtaccgtagaagttccct 37511496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11109631 - 11109594
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11109631 tacaccttaatttgcgggtgtaccgtagaagttccctt 11109594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 48578942 - 48578903
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcccttaa 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  48578942 tacaccttaatttacgggtgtaccgtagaagttcccttaa 48578903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 31908813 - 31908846
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  31908813 tacaccttaatttgcgggtgtaccgtagaagttc 31908846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 51435847 - 51435810
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctt 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  51435847 tacaccttaatttgcgggtgtaccatagaagttccctt 51435810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31681557 - 31681593
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    ||||||||||||| |||||||||||||||||||||||    
T  31681557 tacaccttaatttacgggtgtaccgtagaagttccct 31681593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 55722848 - 55722884
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    ||||||||||||||||||||||||||| |||||||||    
T  55722848 tacaccttaatttgcgggtgtaccgtaaaagttccct 55722884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 56361350 - 56361318
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagtt 33  Q
    |||||||||||||||||||||||||||||||||    
T  56361350 tacaccttaatttgcgggtgtaccgtagaagtt 56361318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 28038056 - 28038091
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccc 36  Q
    |||||||||||||| |||||||||||||||||||||    
T  28038056 tacaccttaatttgtgggtgtaccgtagaagttccc 28038091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 53695421 - 53695386
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccc 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  53695421 tacaccttaatttgcaggtgtaccgtagaagttccc 53695386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9858620 - 9858654
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcc 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  9858620 tacaccttaatttgcaggtgtaccgtagaagttcc 9858654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38836221 - 38836257
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    |||||| |||||||| |||||||||||||||||||||    
T  38836221 tacaccgtaatttgcaggtgtaccgtagaagttccct 38836257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5389237 - 5389201
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  5389237 tacaccttaatttgcgggtgtaccgtagaagttccct 5389201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34665941 - 34665977
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  34665941 tacaccttaatttgcgggtgtaccgtagaagttccct 34665977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1353877 - 1353911
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  1353877 tacaccttaatttgcgggtgtaccgtagaagttcc 1353911  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 37909729 - 37909763
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  37909729 tacaccttaatttgcgggtgtaccgtagaagttcc 37909763  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37083582 - 37083619
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctt 38  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  37083582 tacaccttaatttgcggatgtaccgtagaagttccctt 37083619  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14532859 - 14532823
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    |||||| ||||||||||||||||||||||||||||||    
T  14532859 tacaccgtaatttgcgggtgtaccgtagaagttccct 14532823  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 4673636 - 4673597
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcccttaa 40  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  4673636 tacaccttaatttgcaggtgtaccttagaagttcccttaa 4673597  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 34438222 - 34438183
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcccttaa 40  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  34438222 tacaccttaatttacgggtgtaccatagaagttcccttaa 34438183  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 43690057 - 43690022
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccc 36  Q
    |||||||||||||||||||||| |||||||||||||    
T  43690057 tacaccttaatttgcgggtgtatcgtagaagttccc 43690022  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 11227998 - 11228031
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttc 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  11227998 tacaccttaatttgcaggtgtaccgtagaagttc 11228031  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11598486 - 11598523
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctt 38  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  11598486 tacaccttaatttgcaggtgtaccgtagaagtttcctt 11598523  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14967602 - 14967639
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctt 38  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  14967602 tacaccttaatttgcaggtgtaccgtagaagttccctt 14967639  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 13091284 - 13091320
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    ||||||||||||| |||||||||||||||||||||||    
T  13091284 tacaccttaatttacgggtgtaccgtagaagttccct 13091320  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 13410913 - 13410948
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccc 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  13410913 tacaccttaatttgcggatgtaccgtagaagttccc 13410948  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 32467414 - 32467449
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccc 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  32467414 tacaccgtaatttgcgggtgtaccgtagaagttccc 32467449  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 3425124 - 3425090
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcc 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  3425124 tacactttaatttgcgggtgtaccgtagaagttcc 3425090  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 2318460 - 2318431
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaa 30  Q
    ||||||||||||||||||||||||||||||    
T  2318460 tacaccttaatttgcgggtgtaccgtagaa 2318431  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12362392 - 12362355
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctt 38  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  12362392 tacaccttaatttgcggatgtaccttagaagttccctt 12362355  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28332493 - 28332530
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccctt 38  Q
    |||||||||||||||  |||||||||||||||||||||    
T  28332493 tacaccttaatttgcaagtgtaccgtagaagttccctt 28332530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34303019 - 34303063
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcccttaattaaa 45  Q
    |||||| |||||||| |||||||||||||||||||| ||| ||||    
T  34303019 tacaccgtaatttgcaggtgtaccgtagaagttcccataaataaa 34303063  T

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Target: scaffold0283 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6609 - 6645
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    |||||||||| ||||||||||||||||||||||||||    
T  6609 tacaccttaaattgcgggtgtaccgtagaagttccct 6645  T

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Target: scaffold0077 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 48380 - 48416
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    |||||||||| ||||||||||||||||||||||||||    
T  48380 tacaccttaaattgcgggtgtaccgtagaagttccct 48416  T

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Target: scaffold0077; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 58135 - 58171
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttccct 37  Q
    |||||||||| ||||||||||||||||||||||||||    
T  58135 tacaccttaaattgcgggtgtaccgtagaagttccct 58171  T

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Target: scaffold0113 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 29616 - 29659
Alignment:
Q  1 tacaccttaatttgcgggtgtaccgtagaagttcccttaattaa 44  Q
    ||||||||||||||| ||||||||||||| ||||||||| ||||    
T  29616 tacaccttaatttgcaggtgtaccgtagatgttcccttatttaa 29659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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