View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3318_low_9 (Length: 239)
Name: NF3318_low_9
Description: NF3318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3318_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 48766341 - 48766245
Alignment:
| Q |
1 |
caaacgcacctccaaggataagttcataggggacgaccctcctcttcctaaacatcattaacatatgcgattattaattttcatgaacctaaacaaa |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48766341 |
caaacgcacctccaaggataagttcataggggacgaccctcctcttcctaaacatcattaacatatgcgattattaattttcatgaacctaaacaaa |
48766245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 48766117 - 48766074
Alignment:
| Q |
179 |
tgaatccgtggatagctaaccgcatcaaagataaacacctatac |
222 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48766117 |
tgaatccgtggatagctaacctcatcaaagataaacacctatac |
48766074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University