View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3319_high_10 (Length: 343)
Name: NF3319_high_10
Description: NF3319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3319_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 327
Target Start/End: Original strand, 31937798 - 31938111
Alignment:
| Q |
13 |
aaaataaccaaaatctatgtgtttgctcctcttcccttatcttatttctttattggattgtttggttgtggttgacattgatattttcaatatacctaaa |
112 |
Q |
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||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31937798 |
aaaataatcaaaatctacgtgtttgctcctcttctcttatcttatttctttattggattgtttggttgtggttgacattgatattttcaatatacctaaa |
31937897 |
T |
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| Q |
113 |
gtatctttagatctattaattatgattaggttgttnnnnnnnnncctttattaactctcctttatcaagtttttagatagacatgagtacgattaataaa |
212 |
Q |
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| T |
31937898 |
gtatctttagatctattaattatgattaggttgttaaaaaaaa-cctttattaactctcctttatcaagtttttagatagacatgagtacgattaataaa |
31937996 |
T |
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| Q |
213 |
agaagacatggttatggcataaaggatgaccaaaacccaaaataacatacaccaatgaagaataacgaccaaaataggacaactatcctctcattacatg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31937997 |
agaagacatggttatggcataaaggatgaccaaaacccaaaataacatgcaccaatgaagaataacgaccaaaataggacaactatcctctcattacatg |
31938096 |
T |
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| Q |
313 |
ccacaaacaagaact |
327 |
Q |
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||||||||||||||| |
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| T |
31938097 |
ccacaaacaagaact |
31938111 |
T |
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