View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3319_high_21 (Length: 254)

Name: NF3319_high_21
Description: NF3319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3319_high_21
NF3319_high_21
[»] chr4 (6 HSPs)
chr4 (17-254)||(12320537-12320774)
chr4 (159-254)||(12313202-12313297)
chr4 (17-87)||(43515782-43515852)
chr4 (17-66)||(7853427-7853476)
chr4 (16-71)||(3643087-3643142)
chr4 (34-94)||(37226384-37226444)
[»] chr5 (3 HSPs)
chr5 (23-97)||(10325516-10325590)
chr5 (17-84)||(25034282-25034349)
chr5 (23-66)||(20017605-20017648)
[»] chr6 (8 HSPs)
chr6 (17-86)||(4337556-4337625)
chr6 (18-88)||(33344955-33345024)
chr6 (18-88)||(35121874-35121943)
chr6 (16-65)||(9815621-9815670)
chr6 (16-97)||(12174452-12174533)
chr6 (16-66)||(34329770-34329820)
chr6 (34-91)||(31246259-31246316)
chr6 (16-69)||(34969899-34969952)
[»] chr7 (3 HSPs)
chr7 (16-91)||(31799672-31799747)
chr7 (17-90)||(12177940-12178010)
chr7 (33-87)||(40351695-40351749)
[»] chr2 (2 HSPs)
chr2 (17-90)||(16547797-16547870)
chr2 (16-83)||(2886956-2887022)
[»] chr1 (5 HSPs)
chr1 (16-91)||(1240563-1240638)
chr1 (16-91)||(29062288-29062363)
chr1 (18-63)||(33735695-33735740)
chr1 (28-65)||(15102999-15103036)
chr1 (17-89)||(49762375-49762446)
[»] chr8 (3 HSPs)
chr8 (16-97)||(4350581-4350661)
chr8 (16-81)||(13236314-13236379)
chr8 (23-86)||(13580286-13580348)
[»] chr3 (3 HSPs)
chr3 (34-90)||(33510019-33510075)
chr3 (23-86)||(19149782-19149845)
chr3 (33-89)||(24252032-24252087)
[»] scaffold1173 (1 HSPs)
scaffold1173 (16-82)||(460-525)
[»] scaffold0007 (1 HSPs)
scaffold0007 (23-67)||(4447-4491)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 12320537 - 12320774
Alignment:
Q  17 aagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttaggaccaaccctacctaacacatgaaatttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||| |||||    
T  12320537 aagaagaaaactattggaataattaaaagagcacaattttattgttttgttcaggacaccaaaaatcttcggaccaaccctacctaacacatgacatttt 12320636  T
Q  117 tctcataaaaatgcacttattcttcaccattaataacatcattatcttatatataggggaaaattcatatctcttggcgaggatgagccaaaggaagtac 216  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12320637 tctcataaaaatgcacttattcttcaccatcaataacatcattatcttatatttaggggaaaattcatatctcttggcgaggatgagccaaaggaagtac 12320736  T
Q  217 catttgggtgagtaattggcagaacacaatctctctgt 254  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12320737 catttgggtgagtaattggcagaacacaatctctctgt 12320774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 159 - 254
Target Start/End: Original strand, 12313202 - 12313297
Alignment:
Q  159 tatcttatatataggggaaaattcatatctcttggcgaggatgagccaaaggaagtaccatttgggtgagtaattggcagaacacaatctctctgt 254  Q
    |||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12313202 tatcttatatttaggggaaaattcatatctcttggcgatgatgggccaaaggaagtaccatttgggtgagtaattggcagaacacaatctctctgt 12313297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 43515852 - 43515782
Alignment:
Q  17 aagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttag 87  Q
    ||||||||||||||| |||||| |||||| |||||||||||||||||||  |||||||| |||||||||||    
T  43515852 aagaagaaaactattagaataactaaaagggcacaattttattgtttcgcccaggacaccaaaaatcttag 43515782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 7853427 - 7853476
Alignment:
Q  17 aagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 66  Q
    |||||||||||||||| |||||||||||| | ||||||||||||||||||    
T  7853427 aagaagaaaactattgaaataattaaaagggtacaattttattgtttcgt 7853476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 3643142 - 3643087
Alignment:
Q  16 caagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcagg 71  Q
    ||||||||||| |||||||||||||||||   |||||||||||||||||| |||||    
T  3643142 caagaagaaaaatattggaataattaaaatgacacaattttattgtttcgctcagg 3643087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 37226384 - 37226444
Alignment:
Q  34 aataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttaggaccaac 94  Q
    ||||||||||||| ||| ||||||||| ||||| || ||||| ||| |||||| |||||||    
T  37226384 aataattaaaagaacacgattttattgattcgtccaagacaccaaagatcttaagaccaac 37226444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 10325590 - 10325516
Alignment:
Q  23 aaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttaggaccaaccct 97  Q
    |||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| ||||||| ||| |||||    
T  10325590 aaaactatcggaataattaaaagggcacaattttattgtttcgtccaggacaccaaatatcttagaaccgaccct 10325516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 25034349 - 25034282
Alignment:
Q  17 aagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatct 84  Q
    |||||||||||||||| | |||||||||   || |||||||||||||||| |||||||| ||||||||    
T  25034349 aagaagaaaactattgaagtaattaaaatgacataattttattgtttcgtccaggacaccaaaaatct 25034282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 20017605 - 20017648
Alignment:
Q  23 aaaactattggaataattaaaagagcacaattttattgtttcgt 66  Q
    |||| |||| ||||||||||||| ||||||||||||||||||||    
T  20017605 aaaaatattagaataattaaaagggcacaattttattgtttcgt 20017648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 4337625 - 4337556
Alignment:
Q  17 aagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatctta 86  Q
    ||||||||| ||||| ||||||||||||  ||||||||||||| ||| ||||||||||| ||||||||||    
T  4337625 aagaagaaagctattagaataattaaaatggcacaattttattattttgttcaggacaccaaaaatctta 4337556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 33344955 - 33345024
Alignment:
Q  18 agaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttagg 88  Q
    ||||||||| |||| ||||||||||||| ||| ||||| |||||||||| |||| ||| ||||||||||||    
T  33344955 agaagaaaaatatttgaataattaaaagggcataattt-attgtttcgtccagggcaccaaaaatcttagg 33345024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 35121943 - 35121874
Alignment:
Q  18 agaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttagg 88  Q
    ||||||||| |||| ||||||||||||| ||| ||||| |||||||||| |||| ||| ||||||||||||    
T  35121943 agaagaaaaatatttgaataattaaaagggcataattt-attgtttcgtccagggcaccaaaaatcttagg 35121874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 9815670 - 9815621
Alignment:
Q  16 caagaagaaaactattggaataattaaaagagcacaattttattgtttcg 65  Q
    ||||||||| | |||| ||||||||||||| |||||||||||||||||||    
T  9815670 caagaagaataatattagaataattaaaagggcacaattttattgtttcg 9815621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 12174452 - 12174533
Alignment:
Q  16 caagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttaggaccaaccct 97  Q
    ||||||| ||| ||||| ||||| ||||| | ||||||||||||||||||| || ||||| |||||||| || |||| ||||    
T  12174452 caagaaggaaaatattgaaataaataaaacaacacaattttattgtttcgtccatgacaccaaaaatctcagaaccagccct 12174533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 34329820 - 34329770
Alignment:
Q  16 caagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 66  Q
    ||||||||||| |||| ||||||||||||| |||  |||||||||||||||    
T  34329820 caagaagaaaaatattagaataattaaaagggcatgattttattgtttcgt 34329770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 31246316 - 31246259
Alignment:
Q  34 aataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttaggacc 91  Q
    |||||||||||   ||||||||||||  |||||||||| |||| ||||||||||||||    
T  31246316 aataattaaaatgacacaattttattaattcgttcagggcacttaaaatcttaggacc 31246259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 34969899 - 34969952
Alignment:
Q  16 caagaagaaaactattggaataattaaaagagcacaattttattgtttcgttca 69  Q
    ||||||||||| |||||||||| | ||||| |||| ||||| ||||||||||||    
T  34969899 caagaagaaaaatattggaatagtgaaaagggcactattttgttgtttcgttca 34969952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 31799672 - 31799747
Alignment:
Q  16 caagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttaggacc 91  Q
    ||||||||||   ||| |||||||||| |||||| ||||||||||||||||  ||||||| |||||||||||||||    
T  31799672 caagaagaaacagattagaataattaagagagcaaaattttattgtttcgtctaggacacgaaaaatcttaggacc 31799747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 12177940 - 12178010
Alignment:
Q  17 aagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttaggac 90  Q
    ||||||||||||||| |||||||||| || |||||||||||   |||||| |||| ||| |||| |||||||||    
T  12177940 aagaagaaaactattagaataattaatagggcacaatttta---tttcgtccagggcaccaaaactcttaggac 12178010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 40351749 - 40351695
Alignment:
Q  33 gaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttag 87  Q
    ||||||||||||| | | |||||||||||||||| || ||||| |||||||||||    
T  40351749 gaataattaaaagggaagaattttattgtttcgtccaagacaccaaaaatcttag 40351695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 16547797 - 16547870
Alignment:
Q  17 aagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttaggac 90  Q
    |||||||||||||||| ||  ||||||||  ||||||||||||||||||| |||  ||| ||||||||||||||    
T  16547797 aagaagaaaactattgaaactattaaaaggacacaattttattgtttcgtccagagcacaaaaaatcttaggac 16547870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 2887022 - 2886956
Alignment:
Q  16 caagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatc 83  Q
    ||||||||||| |||| ||||||||||||  | ||||||||||||||| ||| ||| |||||||||||    
T  2887022 caagaagaaaagtattagaataattaaaaaggtacaattttattgttttgttaagg-cactaaaaatc 2886956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 1240563 - 1240638
Alignment:
Q  16 caagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttaggacc 91  Q
    ||||||||||| |||  | ||||||||||| |||||||||||||||||||| || | ||| || ||||||||||||    
T  1240563 caagaagaaaaatatcaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggacc 1240638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 29062363 - 29062288
Alignment:
Q  16 caagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttaggacc 91  Q
    ||||||||||  ||||||| ||||||||||||||  |||||||||||||||| |  |||| |||||||||| ||||    
T  29062363 caagaagaaatatattggagtaattaaaagagcattattttattgtttcgtttaaaacaccaaaaatcttaagacc 29062288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 33735740 - 33735695
Alignment:
Q  18 agaagaaaactattggaataattaaaagagcacaattttattgttt 63  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||    
T  33735740 agaagaaaactattaaaataattaaaagggcacaattttattgttt 33735695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 15103036 - 15102999
Alignment:
Q  28 tattggaataattaaaagagcacaattttattgtttcg 65  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  15103036 tattgaaataattaaaagaacacaattttattgtttcg 15102999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 49762446 - 49762375
Alignment:
Q  17 aagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttagga 89  Q
    |||||||||| |||| ||||||||||||   ||||||||||||||||||| || | ||  |||||||||||||    
T  49762446 aagaagaaaa-tattagaataattaaaaagacacaattttattgtttcgtccaaggcatcaaaaatcttagga 49762375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 4350661 - 4350581
Alignment:
Q  16 caagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttaggaccaaccct 97  Q
    |||||| |||| ||||  |||||||||||| | ||||||| |||||||||| |||||||| ||||||| |||||||| ||||    
T  4350661 caagaaaaaaaatattaaaataattaaaagggtacaattt-attgtttcgtccaggacacgaaaaatcctaggaccagccct 4350581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 13236314 - 13236379
Alignment:
Q  16 caagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaa 81  Q
    ||||||||||| |||||||||||||||||  ||| |||||||||||||| | |||| ||| |||||    
T  13236314 caagaagaaaaatattggaataattaaaatggcataattttattgtttcatccagggcaccaaaaa 13236379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 13580348 - 13580286
Alignment:
Q  23 aaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatctta 86  Q
    |||| |||| |||||||||||||| || ||||| |||||||||| |||||||| ||||||||||    
T  13580348 aaaaatattagaataattaaaagaacataattt-attgtttcgtccaggacaccaaaaatctta 13580286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 33510075 - 33510019
Alignment:
Q  34 aataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttaggac 90  Q
    |||||||||||  |||||||||||||||||||  | |||||| ||||||||||||||    
T  33510075 aataattaaaatggcacaattttattgtttcgccctggacaccaaaaatcttaggac 33510019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 19149845 - 19149782
Alignment:
Q  23 aaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatctta 86  Q
    |||| |||||||||||||||||| ||  |||||| ||||||||| | ||| |||||||||||||    
T  19149845 aaaaatattggaataattaaaagggcgtaattttgttgtttcgtcctggatactaaaaatctta 19149782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 24252032 - 24252087
Alignment:
Q  33 gaataattaaaagagcacaattttattgtttcgttcaggacactaaaaatcttagga 89  Q
    ||||||||||||| |||||||||||||| ||||| |||||||| || | ||||||||    
T  24252032 gaataattaaaag-gcacaattttattgattcgtccaggacaccaatagtcttagga 24252087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1173 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 460 - 525
Alignment:
Q  16 caagaagaaaactattggaataattaaaagagcacaattttattgtttcgttcaggacactaaaaat 82  Q
    ||||||||||| |||| ||||||||||| | |||||| ||||| ||||||| |||||||| ||||||    
T  460 caagaagaaaaatatttgaataattaaaggggcacaa-tttatagtttcgtccaggacaccaaaaat 525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 4447 - 4491
Alignment:
Q  23 aaaactattggaataattaaaagagcacaattttattgtttcgtt 67  Q
    |||| ||||| ||||||||||||  ||||||||||||||||||||    
T  4447 aaaaatattgaaataattaaaaggacacaattttattgtttcgtt 4491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University