View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3319_high_27 (Length: 235)
Name: NF3319_high_27
Description: NF3319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3319_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 31428071 - 31428219
Alignment:
| Q |
16 |
gaacaagggatttgagaggatgatgaactgagaaagtggaagctagcaataacataatagtataactgaaaatggaattaactgcttgaataggagctgg |
115 |
Q |
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| T |
31428071 |
gaacaagggatttgagaggatgatgaactgagaaagtggaagctagcaataacataatagtataactgaaaatggaattaactgcttgaagaggagctgg |
31428170 |
T |
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| Q |
116 |
aagaagcagcacatgnnnnnnngtgagcaaaaatataatgaaattaaaa |
164 |
Q |
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| T |
31428171 |
aagaagcagcacatgaaaaaaagtgagcaaaaatataatgaaattaaaa |
31428219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 31428250 - 31428309
Alignment:
| Q |
161 |
aaaatcatgtgttgaattaactcactaactacgaatgcaagacataattaaggatcaaag |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31428250 |
aaaatcatgtgttgaattaactcactaactacgaatgcaagacataattaaggatcaaag |
31428309 |
T |
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