View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3319_high_9 (Length: 358)
Name: NF3319_high_9
Description: NF3319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3319_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 48923026 - 48923378
Alignment:
| Q |
1 |
gtcagtaaaatttggtaaaggaagaggggtgtaaattggaagagagcatggctgtgattttaaatccatctttcaccaaaaaacaaacaaaatccatatc |
100 |
Q |
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| T |
48923026 |
gtcagtaaaatttggtaaaggaagaggggtgtaaattggaagagggcatggctgtgattttaaatccatctttcaccaaaaaacaaacaaaatccatatc |
48923125 |
T |
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| Q |
101 |
agtaaattaaagttactcctgatgtcagtaaataaaagggaatatatcatactaatgtagagggaggcttcgttctgcaaacatgagaaggaagaacaat |
200 |
Q |
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| T |
48923126 |
agtaaattaaagttactcctgatgtcagtaaataaaggggaatatatcatactaatgtagagggaggcttcgttctgcaaacatgagaaggaagaacaat |
48923225 |
T |
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| Q |
201 |
tttgatgtgactttacataggaactaggtatcgataattagcaatgtccaaaacttctg-----------catacatgtttgtgcttgctttgagatata |
289 |
Q |
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| T |
48923226 |
tttgatgtgactttacataggaactaggtatcgataattagcaatgtccaaagcttctgctaggtagaaacatacatgtttgtgcttgctttgagatata |
48923325 |
T |
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| Q |
290 |
taagctataagctacaatgattcgaaacgtatgaaagtggaaggaaatattaa |
342 |
Q |
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| T |
48923326 |
taagctataagctacaatgatttgaaacgtatgaaagtggaaggaaatattaa |
48923378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 48922988 - 48923034
Alignment:
| Q |
60 |
ttaaatccatctttcaccaaaaaacaaacaaaatccatatcagtaaa |
106 |
Q |
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| T |
48922988 |
ttaaatccatctttcaccaaaaaacaaacaaaatccatgtcagtaaa |
48923034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 48878268 - 48878206
Alignment:
| Q |
141 |
aatatatcatactaatgtagagggaggcttcgttctgcaaacatgagaaggaagaacaatttt |
203 |
Q |
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| T |
48878268 |
aatatatcatgctaaggaagagggaggcttcatcctgcaaacatgagaaagaagaccaatttt |
48878206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 48915512 - 48915558
Alignment:
| Q |
17 |
aaaggaagaggggtgtaaattggaagagagcatggctgtgattttaa |
63 |
Q |
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| T |
48915512 |
aaaggaagaggggtgtaaattggaagagggcatgactctgattttaa |
48915558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 30552268 - 30552221
Alignment:
| Q |
17 |
aaaggaagaggggtgtaaattggaagagagcatgg-ctgtgattttaa |
63 |
Q |
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| T |
30552268 |
aaaggaagacgggtgtaaattggaagagggcatggtctgtgattttaa |
30552221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 48873188 - 48873144
Alignment:
| Q |
159 |
agagggaggcttcgttctgcaaacatgagaaggaagaacaatttt |
203 |
Q |
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| T |
48873188 |
agagggaggctttgttatgcaaacatgagaaagaagaagaatttt |
48873144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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