View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3319_low_1 (Length: 858)
Name: NF3319_low_1
Description: NF3319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3319_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 21 - 447
Target Start/End: Original strand, 928758 - 929174
Alignment:
| Q |
21 |
caagcaagaaaagggtattaaggggattccaagattgctttctgtcggtgtgtgtctaccatgtttgacttgacttgactatgtgtttattgggatccaa |
120 |
Q |
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| T |
928758 |
caagcaagaaaagggtattaaggggattccaagattgctttctgtcggtgtgtgtctaccatgtttgacttgacttgactatgtgtttaatgggatccaa |
928857 |
T |
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| Q |
121 |
atcaatgttnnnnnnntagggtcaaatagtgaaacattatcatatcatatgattttgattccaatacaatataattgatttggtcagttaaataaatgaa |
220 |
Q |
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| T |
928858 |
atcaatgttaaaaaaatagggttaaatagtgaaacattatcatat-----gattttgattccaatacaatataattgatttggtcagttaaataaatgaa |
928952 |
T |
|
| Q |
221 |
ttgaattagtttaaccaagtaacatcccaaatgaacaatgcacttaaaattacattcaaatatataccc--gtctctaaatttttgagtcaatccttaat |
318 |
Q |
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| T |
928953 |
ttgaattagtttaaccaagtaacatcccaaatgaacaatgcacttaaaa---cattcaaatatatacccctgtctctaaatttttgagtcaatccttaat |
929049 |
T |
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| Q |
319 |
tagttgatgaactggaatggaacatccacaaattcaacaacaatagaaatgaaattacaaattgagtacaacttcttcttaaattctaccataacctcct |
418 |
Q |
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| T |
929050 |
tagttgatgaactggaatggaacatccacaaattcaacaacaatagaaatgaaattacaaattgagtacaacttcttcttaaattctaccataacctcct |
929149 |
T |
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| Q |
419 |
gactagcaagcaacggagaaacacatcat |
447 |
Q |
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| T |
929150 |
gact----agcaacggagaaacacatcat |
929174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 688 - 837
Target Start/End: Original strand, 929746 - 929895
Alignment:
| Q |
688 |
aaccattttaatatgcgacactatgccgcttacattcattgagtttccttcaaagataatttgatttctacctagcaaaatgcattagattgtatccatc |
787 |
Q |
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| T |
929746 |
aaccattttaatatgcgacactatgccgcttacattcattgagtttccttcaaagataatttgatttctacctagaaaaatgcattagattgtatccatc |
929845 |
T |
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| Q |
788 |
catacacgataaatgtgagaatttcctacctttcttcccacctttgatac |
837 |
Q |
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| T |
929846 |
catacacgataaatgtgagaatttcctacctttcttaccacctttgatac |
929895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 440 - 524
Target Start/End: Original strand, 929256 - 929340
Alignment:
| Q |
440 |
cacatcatagagagaagccaaacattcgggcacaacagccgaacttagacggtcttctgaaacattaaagaaagtccgaataaga |
524 |
Q |
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| T |
929256 |
cacaacatagagagaagccaaacattcgggcacaacagccgaacttagacggtcttctgaaacattaaagaaagtccgagtaaga |
929340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 519 - 598
Target Start/End: Original strand, 929362 - 929441
Alignment:
| Q |
519 |
ataagaaacagtaagacgatgaaataagtcacaataaggaccttgtgaagtttttgtatgatatgaaaaatgtatcatga |
598 |
Q |
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| T |
929362 |
ataaaaaacagtaagacgatgaaataagtcacaattaggaccttgtgaagtttttgtatgatatgaaaaatgtatcatga |
929441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 497 - 593
Target Start/End: Complemental strand, 1201614 - 1201514
Alignment:
| Q |
497 |
tgaaacattaaagaaagtccgaataaga----aacagtaagacgatgaaataagtcacaataaggaccttgtgaagtttttgtatgatatgaaaaatgta |
592 |
Q |
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| T |
1201614 |
tgaaacattaaagataatctgaataagattaaaacagtaagacaatgcaataactcacaatcaggacctcgtgaagtttttgtatgatatgaaaaatgta |
1201515 |
T |
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| Q |
593 |
t |
593 |
Q |
| |
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| T |
1201514 |
t |
1201514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 440 - 496
Target Start/End: Complemental strand, 1201696 - 1201640
Alignment:
| Q |
440 |
cacatcatagagagaagccaaacattcgggcacaacagccgaacttagacggtcttc |
496 |
Q |
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| T |
1201696 |
cacaacatggagagaagccaaacattcgggcacaacagcagaacttagacgctcttc |
1201640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 641 - 675
Target Start/End: Original strand, 929642 - 929676
Alignment:
| Q |
641 |
ataaccgtttaacggtttagtcctcgattccatcc |
675 |
Q |
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| T |
929642 |
ataacagtttaacggtttagtcctcgattccatcc |
929676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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