View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3319_low_13 (Length: 328)
Name: NF3319_low_13
Description: NF3319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3319_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 311
Target Start/End: Original strand, 4850900 - 4851199
Alignment:
| Q |
13 |
caaccactcaagaatttttagatattnnnnnnn-gttgaaagtgcttaatgaaaaatggtccttgcgttcatagagtttcaagtatgtcaaggatgtgag |
111 |
Q |
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| T |
4850900 |
caaccactcaagaatttttagatattaaaaaaaagttgaaagtgcttaatgaaaaatggtccttgcgttcatatagtttcaagtatgtcaaggatgtgag |
4850999 |
T |
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| Q |
112 |
attgctagtgattagccaatggtgcttaatgaaaatgtcaatcaacaaaccaattgctgcacaaatcgagctggcgtaactcttcatagaatatgttgtt |
211 |
Q |
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| T |
4851000 |
attgctagtgattagccaatggtgcttaatgaaaatgtcaatcaacaaaccaattgctgcacaaatcgagctggcgtaactcttcatagaatatgttgtt |
4851099 |
T |
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| Q |
212 |
gagggataagttcattatatgtgaccagaataaatgttagagcatttaactctgttccaagaacaaaaattgcattaacatcaatgtcacaaaataaaaa |
311 |
Q |
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| T |
4851100 |
gagggataggtccattatatgtgaccagaagaaatgttagagcatttaactctgttccaagaacaaaaattacattaacatcaatgtcacaaaataaaaa |
4851199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 133 - 311
Target Start/End: Original strand, 4848073 - 4848251
Alignment:
| Q |
133 |
gtgcttaatgaaaatgtcaatcaacaaaccaattgctgcacaaatcgagctggcgtaactcttcatagaatatgttgttgagggataagttcattatatg |
232 |
Q |
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| T |
4848073 |
gtgcttaatgaatatgtcaatcaacaaaccaattgctgcacaaatcgagctggcataactcttcatagaatatattgttgagggataggtccattatatg |
4848172 |
T |
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| Q |
233 |
tgaccagaataaatgttagagcatttaactctgttccaagaacaaaaattgcattaacatcaatgtcacaaaataaaaa |
311 |
Q |
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| T |
4848173 |
tgaccagaagaaatgttagagcatttaactcagttccaagaacaaaaattgcattaacatcaatgtcacaaaataaaaa |
4848251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 115
Target Start/End: Complemental strand, 5202770 - 5202739
Alignment:
| Q |
84 |
agagtttcaagtatgtcaaggatgtgagattg |
115 |
Q |
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| T |
5202770 |
agagtttcaagtatgtcaaggatgtgagattg |
5202739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 5205552 - 5205497
Alignment:
| Q |
229 |
tatgtgaccagaataaatgttagagcatttaactctgttccaagaacaaaaattgc |
284 |
Q |
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| T |
5205552 |
tatgtgaccagaagaaaagttagagcacttgactcttttccaagaacaacaattgc |
5205497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 314
Target Start/End: Complemental strand, 5141157 - 5141124
Alignment:
| Q |
281 |
ttgcattaacatcaatgtcacaaaataaaaaagg |
314 |
Q |
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| T |
5141157 |
ttgcattaacatcaatgtcacaaaatataaaagg |
5141124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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