View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3319_low_17 (Length: 296)

Name: NF3319_low_17
Description: NF3319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3319_low_17
NF3319_low_17
[»] chr1 (3 HSPs)
chr1 (133-281)||(33786010-33786159)
chr1 (89-137)||(33786226-33786274)
chr1 (37-75)||(33786353-33786391)


Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 133 - 281
Target Start/End: Complemental strand, 33786159 - 33786010
Alignment:
Q  133 attgtccacattacattttagaggagccgaatcagannnnnnnacacacaacaccgtcatttattcattacaaagttaacataatttaaatatgcgattg 232  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33786159 attgtccacattacattttagaggagccgaatcagatttttttacacacaacaccgtcatttattcattacaaagttaacataatttaaatatgcgattg 33786060  T
Q  233 attaagtttagtata-ggttaataaatatcttgtatatttgaacaatgat 281  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||    
T  33786059 attaagtttagtatatagttaataaatatcttgtatatttgaacaatgat 33786010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 33786274 - 33786226
Alignment:
Q  89 ttttggggcaaagattctctaaagtgagaaaatcaagcttaataattgt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33786274 ttttggggcaaagattctctaaagtgagaaaatcaagcttaataattgt 33786226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 33786391 - 33786353
Alignment:
Q  37 caaaaatatccatctcttattacatggttaagactgtac 75  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  33786391 caaaaatatccatctcttattacatggttaagacagtac 33786353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University