View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3319_low_18 (Length: 291)

Name: NF3319_low_18
Description: NF3319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3319_low_18
NF3319_low_18
[»] chr1 (4 HSPs)
chr1 (1-275)||(15196216-15196490)
chr1 (1-275)||(15216634-15216908)
chr1 (1-275)||(15195565-15195839)
chr1 (1-275)||(15215983-15216257)
[»] scaffold1961 (1 HSPs)
scaffold1961 (88-275)||(1-188)
[»] chr5 (6 HSPs)
chr5 (2-275)||(17563206-17563479)
chr5 (2-272)||(17570305-17570575)
chr5 (10-275)||(17690734-17690999)
chr5 (23-275)||(17683821-17684073)
chr5 (109-275)||(17701991-17702157)
chr5 (8-115)||(17622015-17622122)
[»] chr7 (6 HSPs)
chr7 (2-275)||(14765120-14765393)
chr7 (2-272)||(14757960-14758230)
chr7 (10-275)||(14652753-14653018)
chr7 (23-275)||(14661188-14661440)
chr7 (82-275)||(14750118-14750311)
chr7 (109-275)||(14627336-14627502)
[»] chr8 (1 HSPs)
chr8 (10-190)||(24395548-24395728)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 15196216 - 15196490
Alignment:
Q  1 aagtggctcactctatcaattacctcattcaggcgcatctcagccttctttagataatccccacaatcatagcactcaatcaatttctgtgattcagccc 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15196216 aagtggctcactttatcaattacctcattcaggcgcatctcagccttctttagataatccccacaatcatagcgctcaatcaatttctgtgattcagccc 15196315  T
Q  101 ggtagaactcagctgaaacttgcagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15196316 ggtagaactcagctgaaacttgcagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcag 15196415  T
Q  201 ttttctatcaacaacttctccagcatagtccttgcatactaataccaaaagcatattcgacaatcgagtccttat 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15196416 ttttctatcaacaacttctccagcatagtccttgcatactaataccaaaagcatattcgacaatcgagtccttat 15196490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 15216634 - 15216908
Alignment:
Q  1 aagtggctcactctatcaattacctcattcaggcgcatctcagccttctttagataatccccacaatcatagcactcaatcaatttctgtgattcagccc 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15216634 aagtggctcactttatcaattacctcattcaggcgcatctcagccttctttagataatccccacaatcatagcgctcaatcaatttctgtgattcagccc 15216733  T
Q  101 ggtagaactcagctgaaacttgcagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15216734 ggtagaactcagctgaaacttgcagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcag 15216833  T
Q  201 ttttctatcaacaacttctccagcatagtccttgcatactaataccaaaagcatattcgacaatcgagtccttat 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15216834 ttttctatcaacaacttctccagcatagtccttgcatactaataccaaaagcatattcgacaatcgagtccttat 15216908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 15195565 - 15195839
Alignment:
Q  1 aagtggctcactctatcaattacctcattcaggcgcatctcagccttctttagataatccccacaatcatagcactcaatcaatttctgtgattcagccc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||    
T  15195565 aagtggctcactctatcaattacctcattcaggcgcatctcagccttcttgagataatccccacaatcacagcactcaataaatttctgtgattcagccc 15195664  T
Q  101 ggtagaactcagctgaaacttgcagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcag 200  Q
    |||||||||| |||| ||  ||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||     
T  15195665 ggtagaactcggctggaagctgcagaaaaggattctcaaattcttgcacataaacggaaggtcctaaatccattagcatatttgttatatttctaatcac 15195764  T
Q  201 ttttctatcaacaacttctccagcatagtccttgcatactaataccaaaagcatattcgacaatcgagtccttat 275  Q
    |||| | | |||||||||||||||||||| ||||||||||||| || ||||| ||||||||||||||||||||||    
T  15195765 ttttatgttaacaacttctccagcatagtacttgcatactaattcccaaagcgtattcgacaatcgagtccttat 15195839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 15215983 - 15216257
Alignment:
Q  1 aagtggctcactctatcaattacctcattcaggcgcatctcagccttctttagataatccccacaatcatagcactcaatcaatttctgtgattcagccc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||    
T  15215983 aagtggctcactctatcaattacctcattcaggcgcatctcagccttcttgagataatccccacaatcacagcactcaataaatttctgtgattcagccc 15216082  T
Q  101 ggtagaactcagctgaaacttgcagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcag 200  Q
    |||||||||| |||| ||  ||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||     
T  15216083 ggtagaactcggctggaagctgcagaaaaggattctcaaattcttgcacataaacggaaggtcctaaatccattagcatatttgttatatttctaatcac 15216182  T
Q  201 ttttctatcaacaacttctccagcatagtccttgcatactaataccaaaagcatattcgacaatcgagtccttat 275  Q
    |||| | | |||||||||||||||||||| ||||||||||||| || ||||| ||||||||||||||||||||||    
T  15216183 ttttatgttaacaacttctccagcatagtacttgcatactaattcccaaagcgtattcgacaatcgagtccttat 15216257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1961 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold1961
Description:

Target: scaffold1961; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 88 - 275
Target Start/End: Original strand, 1 - 188
Alignment:
Q  88 tgtgattcagcccggtagaactcagctgaaacttgcagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgtta 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1 tgtgattcagcccggtagaactcagctgaaacttgcagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatattcgtta 100  T
Q  188 tatatctaatcagttttctatcaacaacttctccagcatagtccttgcatactaataccaaaagcatattcgacaatcgagtccttat 275  Q
    | | ||||||||||||| ||| ||| |||||  |||||||||||||||||| |||| |||||||||||||| | ||||||||||||||    
T  101 tttttctaatcagttttttattaacgacttcctcagcatagtccttgcatattaatcccaaaagcatattcaaaaatcgagtccttat 188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 275
Target Start/End: Complemental strand, 17563479 - 17563206
Alignment:
Q  2 agtggctcactctatcaattacctcattcaggcgcatctcagccttctttagataatccccacaatcatagcactcaatcaatttctgtgattcagcccg 101  Q
    |||||||||||||||||| | ||||||||||  |||||||||||||||| |||||||||||| || || |||||||||| ||| ||||||||||||||||    
T  17563479 agtggctcactctatcaagttcctcattcagatgcatctcagccttcttgagataatccccagaaccacagcactcaataaatatctgtgattcagcccg 17563380  T
Q  102 gtagaactcagctgaaacttgcagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcagt 201  Q
     |||||||||| |||| || |||| ||||||||||||||||||| |  ||||||||||||||||  ||| |||||||| |||||||||  ||||||||||    
T  17563379 atagaactcagttgaagctagcagaaaaggattctcaaattcttccccataaacggaaggacctgtatcaattagcatctttgttatacttctaatcagt 17563280  T
Q  202 tttctatcaacaacttctccagcatagtccttgcatactaataccaaaagcatattcgacaatcgagtccttat 275  Q
      ||||| ||||||||| || |||   ||  ||| ||||||| |||||||||||||| ||| ||||||||||||    
T  17563279 cctctattaacaacttcgccggcacgctcactgcgtactaattccaaaagcatattcaacagtcgagtccttat 17563206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 272
Target Start/End: Complemental strand, 17570575 - 17570305
Alignment:
Q  2 agtggctcactctatcaattacctcattcaggcgcatctcagccttctttagataatccccacaatcatagcactcaatcaatttctgtgattcagcccg 101  Q
    |||||| || ||||||  || |||||||||||| | ||||| | ||||| |||||||| || |||||| ||||||| || |||||||| ||||||||||     
T  17570575 agtggcacattctatctgtttcctcattcaggcacctctcaactttcttgagataatcaccgcaatcacagcactcgataaatttctgagattcagccct 17570476  T
Q  102 gtagaactcagctgaaacttgcagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcagt 201  Q
    ||||||||||||||||||||| || || | | |||| |||||||||  |||||| |||| |||||||||||||||||| ||||| |||| | ||||||||    
T  17570475 gtagaactcagctgaaacttgtagaaacgaagtctcgaattcttgctcataaacagaagaacctaaatccattagcatctttgtaatatttttaatcagt 17570376  T
Q  202 tttctatcaacaacttctccagcatagtccttgcatactaataccaaaagcatattcgacaatcgagtcct 272  Q
    | | ||| |||| |||| ||||||   ||||||||||||||| |||||||||||||||||| |||||||||    
T  17570375 tctatattaacatcttccccagcacgttccttgcatactaattccaaaagcatattcgacagtcgagtcct 17570305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 17690734 - 17690999
Alignment:
Q  10 actctatcaattacctcattcaggcgcatctcagccttctttagataatccccacaatcatagcactcaatcaatttctgtgattcagcccggtagaact 109  Q
    ||||||||  || ||||||||| || | ||||| | ||||| |||||||||||||| ||| | |||| |||  ||||||| |||||||||  |||  | |    
T  17690734 actctatccgtttcctcattcaagcacctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagatt 17690833  T
Q  110 cagctgaaacttgcagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcagttttctatc 209  Q
    ||||| |||||||||| |||||| |||||||| |||||  |||||| |||||||||||||| |||||||| ||||| | || ||||||||||| ||| |     
T  17690834 cagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatcaattagcatctttgtaacatttctaatcagttctctgtt 17690933  T
Q  210 aacaacttctccagcatagtccttgcatactaataccaaaagcatattcgacaatcgagtccttat 275  Q
    |||| |||| || |||   |||||| |||| ||  ||||||||||||||||||||||| |||||||    
T  17690934 aacatcttccccggcacgctccttgaatacaaactccaaaagcatattcgacaatcgattccttat 17690999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 23 - 275
Target Start/End: Original strand, 17683821 - 17684073
Alignment:
Q  23 cctcattcaggcgcatctcagccttctttagataatccccacaatcatagcactcaatcaatttctgtgattcagcccggtagaactcagctgaaacttg 122  Q
    |||||||||||| | ||||| | ||||| ||||||||||| || ||| | ||||| ||  ||||||  |||||||||  |||  | |||||| |||||||    
T  17683821 cctcattcaggcacctctcaactttcttgagataatccccgcagtcacaacactcgatatatttctcggattcagccttgtaagattcagctaaaacttg 17683920  T
Q  123 cagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcagttttctatcaacaacttctcca 222  Q
    ||| |||||| ||||||||||||||  |||||| |||||||||||||| |||||||| ||||| | || ||||||||||| ||| | |||| |||| ||     
T  17683921 cagaaaaggagtctcaaattcttgctcataaacagaaggacctaaatcaattagcatctttgtaacatttctaatcagttctctgttaacatcttccccg 17684020  T
Q  223 gcatagtccttgcatactaataccaaaagcatattcgacaatcgagtccttat 275  Q
    ||| | |||||  |||| ||  |||||||| ||||||||| | ||||||||||    
T  17684021 gcacactccttaaatacaaactccaaaagcgtattcgacagttgagtccttat 17684073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 109 - 275
Target Start/End: Original strand, 17701991 - 17702157
Alignment:
Q  109 tcagctgaaacttgcagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcagttttctat 208  Q
    |||||| |||||||||| |||||| |||||||| |||||  |||||| |||||||||||||| |||||||| ||||| | || ||||||||||| ||| |    
T  17701991 tcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatcaattagcatctttgtaacatttctaatcagttctctgt 17702090  T
Q  209 caacaacttctccagcatagtccttgcatactaataccaaaagcatattcgacaatcgagtccttat 275  Q
     |||| |||| || |||   || ||   ||| ||  |||||||| ||||||||| ||||||||||||    
T  17702091 taacatcttccccggcacgctctttaagtacaaactccaaaagcgtattcgacagtcgagtccttat 17702157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 17622015 - 17622122
Alignment:
Q  8 tcactctatcaattacctcattcaggcgcatctcagccttctttagataatccccacaatcatagcactcaatcaatttctgtgattcagcccggtagaa 107  Q
    |||||||||| | | |||||||||| ||| ||||||| ||||| |||||||||||||||||| | ||  |||| |||||||| | ||| |||| ||||||    
T  17622015 tcactctatccaattcctcattcagccgcctctcagctttcttgagataatccccacaatcacaacatccaataaatttctgagtttctgccctgtagaa 17622114  T
Q  108 ctcagctg 115  Q
    ||||||||    
T  17622115 ctcagctg 17622122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 2 - 275
Target Start/End: Original strand, 14765120 - 14765393
Alignment:
Q  2 agtggctcactctatcaattacctcattcaggcgcatctcagccttctttagataatccccacaatcatagcactcaatcaatttctgtgattcagcccg 101  Q
    |||||||||||||||||| | ||||||||||  |||||||||||||||| |||||||||||| || || |||||||||| ||| ||||||||||||||||    
T  14765120 agtggctcactctatcaagttcctcattcagatgcatctcagccttcttgagataatccccagaaccacagcactcaataaatatctgtgattcagcccg 14765219  T
Q  102 gtagaactcagctgaaacttgcagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcagt 201  Q
     |||||||||| |||| || |||| ||||||||||||||||||| |  ||||||||||||||||  ||| |||||||| |||||||||  ||||||||||    
T  14765220 atagaactcagttgaagctagcagaaaaggattctcaaattcttcctcataaacggaaggacctgtatcaattagcatctttgttatacttctaatcagt 14765319  T
Q  202 tttctatcaacaacttctccagcatagtccttgcatactaataccaaaagcatattcgacaatcgagtccttat 275  Q
      ||||| ||||||||| || |||   ||  ||  ||||||| |||||||||||||| ||| ||||||||||||    
T  14765320 cctctattaacaacttcgccggcacgctcactgtgtactaattccaaaagcatattcaacagtcgagtccttat 14765393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 2 - 272
Target Start/End: Original strand, 14757960 - 14758230
Alignment:
Q  2 agtggctcactctatcaattacctcattcaggcgcatctcagccttctttagataatccccacaatcatagcactcaatcaatttctgtgattcagcccg 101  Q
    |||||| || ||||||  || |||||||||||| | ||||| | ||||| |||||||| || |||||| ||||||| || |||||||| ||||||||||     
T  14757960 agtggcacattctatctgtttcctcattcaggcacctctcaactttcttgagataatcaccgcaatcacagcactcgataaatttctgagattcagccct 14758059  T
Q  102 gtagaactcagctgaaacttgcagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcagt 201  Q
    ||||||||||||||||||||| || || | | |||| |||||||||   ||||| |||| |||||||||||||||||| ||||| |||| | ||||||||    
T  14758060 gtagaactcagctgaaacttgtagaaacgaagtctcgaattcttgctcttaaacagaagaacctaaatccattagcatctttgtaatatttttaatcagt 14758159  T
Q  202 tttctatcaacaacttctccagcatagtccttgcatactaataccaaaagcatattcgacaatcgagtcct 272  Q
    | | ||| |||| |||| ||||||   ||||||||||||||| |||||||||||||||||| |||||||||    
T  14758160 tctatattaacatcttccccagcacgttccttgcatactaattccaaaagcatattcgacagtcgagtcct 14758230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 14653018 - 14652753
Alignment:
Q  10 actctatcaattacctcattcaggcgcatctcagccttctttagataatccccacaatcatagcactcaatcaatttctgtgattcagcccggtagaact 109  Q
    ||||||||  || ||||||||||||   ||||| | ||||| |||||||||||||| ||| | |||| |||  ||||||| |||||||||  |||  | |    
T  14653018 actctatccgtttcctcattcaggcatctctcaactttcttgagataatccccacagtcaaaacacttaatatatttctgggattcagccttgtaagatt 14652919  T
Q  110 cagctgaaacttgcagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcagttttctatc 209  Q
    ||||| |||||||||| |||||| |||||||| |||||  |||||| ||||||||||||||||| ||||| ||||| | || ||||||||||| ||| |     
T  14652918 cagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatccatcagcatctttgtaacatttctaatcagttctctgtt 14652819  T
Q  210 aacaacttctccagcatagtccttgcatactaataccaaaagcatattcgacaatcgagtccttat 275  Q
    |||| |||| || |||   |||||  |||| ||  |||||||| ||||||||||||||||||||||    
T  14652818 aacatcttccccggcacgctccttaaatacaaactccaaaagcgtattcgacaatcgagtccttat 14652753  T

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Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 275
Target Start/End: Complemental strand, 14661440 - 14661188
Alignment:
Q  23 cctcattcaggcgcatctcagccttctttagataatccccacaatcatagcactcaatcaatttctgtgattcagcccggtagaactcagctgaaacttg 122  Q
    ||||| |||||| | ||||| | ||||| ||||||||| | || ||| ||||||||||  ||||||  |||||||||  |||  | |||||| |||||||    
T  14661440 cctcagtcaggcacctctcaactttcttgagataatcctcgcagtcacagcactcaatatatttctcagattcagccttgtaagattcagctaaaacttg 14661341  T
Q  123 cagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcagttttctatcaacaacttctcca 222  Q
    ||| |||||| ||||||||||||||  |||||| |||||||||||||| |||||||| ||||| | || ||||||||||| ||| | |||| |||| ||     
T  14661340 cagaaaaggagtctcaaattcttgctcataaacagaaggacctaaatcaattagcatctttgtaacatttctaatcagttctctgttaacatcttccccg 14661241  T
Q  223 gcatagtccttgcatactaataccaaaagcatattcgacaatcgagtccttat 275  Q
    |||   |||||| |||| ||  |||||||| ||||||||| ||||||||||||    
T  14661240 gcacgctccttgaatacaaactccaaaagcgtattcgacagtcgagtccttat 14661188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 82 - 275
Target Start/End: Original strand, 14750118 - 14750311
Alignment:
Q  82 aatttctgtgattcagcccggtagaactcagctgaaacttgcagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatat 181  Q
    |||||||| ||||||||||  |||||||||||||||||||| |  |||||| |||||||||||| |  ||||||  | |||||||||||||||||||| |    
T  14750118 aatttctgggattcagccctatagaactcagctgaaacttgtaaaaaaggagtctcaaattcttcctcataaacaaagggacctaaatccattagcatct 14750217  T
Q  182 ttgttatatatctaatcagttttctatcaacaacttctccagcatagtccttgcatactaataccaaaagcatattcgacaatcgagtccttat 275  Q
    ||| || || ||||||| ||| ||||| |||| ||||  ||||||  |||||| |||| ||  |||||||| ||||||||| ||||||||||||    
T  14750218 ttgatagatttctaatcggttctctattaacatcttccgcagcatgctccttgaatacaaactccaaaagcgtattcgacagtcgagtccttat 14750311  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 275
Target Start/End: Complemental strand, 14627502 - 14627336
Alignment:
Q  109 tcagctgaaacttgcagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatatatctaatcagttttctat 208  Q
    |||||| |||||||||| |||||| |||||||| |||||  |||||| |||||||||||||| |||||||| ||||| | || ||||||||||| ||| |    
T  14627502 tcagctaaaacttgcagaaaaggagtctcaaatacttgctcataaacagaaggacctaaatcaattagcatctttgtaacatttctaatcagttctctgt 14627403  T
Q  209 caacaacttctccagcatagtccttgcatactaataccaaaagcatattcgacaatcgagtccttat 275  Q
     |||| |||| || |||   || ||  |||| ||  |||||||| |||||||||||||| |||||||    
T  14627402 taacatcttccccggcacgctctttaaatacaaactccaaaagcgtattcgacaatcgattccttat 14627336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 190
Target Start/End: Original strand, 24395548 - 24395728
Alignment:
Q  10 actctatcaattacctcattcaggcgcatctcagccttctttagataatccccacaatcatagcactcaatcaatttctgtgattcagcccggtagaact 109  Q
    |||||||| ||| |||||||||| ||| | ||||| ||||| |||||||| ||||||||| | |||||||| ||| | || |||||  || | || ||||    
T  24395548 actctatccatttcctcattcagacgcctttcagctttcttaagataatcaccacaatcacaacactcaatgaatctttgggattctacctgataaaact 24395647  T
Q  110 cagctgaaacttgcagcaaaggattctcaaattcttgcatataaacggaaggacctaaatccattagcatatttgttatat 190  Q
    ||||||||||||| || ||| ||  |||||| |||||   |||||| |  |||||||||||||||||||| ||||||||||    
T  24395648 cagctgaaacttgaagaaaatgagcctcaaaatcttgaccataaacagctggacctaaatccattagcatttttgttatat 24395728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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