View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3319_low_2 (Length: 573)
Name: NF3319_low_2
Description: NF3319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3319_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 19 - 568
Target Start/End: Complemental strand, 48848560 - 48848011
Alignment:
| Q |
19 |
tcatgaaataacacccttccactaaagacgaggcattnnnnnnngagatcactggcatattcttctcctcccccacacccatcagtgcatttgtgatgtt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
48848560 |
tcatgaaataacacccttccactaaagacgaggcattaaaaaaagagatcactggcatattctcctcctcccccacacccatcagtgcatttgtgatgtt |
48848461 |
T |
|
| Q |
119 |
catttaacaacaagtcacgtttaacataattattttttgtagacgatctattatgcatcatcttccaagcatgcataaaaaatttcagagctacatgttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48848460 |
catttaacaacaagtcacgtttaacataattattttttgtagacgatctattatgcatcatcttccaagcatgcataaaaaatttcagagctacatgttt |
48848361 |
T |
|
| Q |
219 |
aatgtacacaatctcatgaaatagagaaacatcctccaactcaacgcgtgttagaatattatacacattttcaaagaagtaaatatcatttaaagttgaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48848360 |
aatgtacacaatctcatgaaatagagaaacatcct-caactcaacgcgtgttagaatatcgtacacattttcaaagaagtaaatatcatttaaagttgaa |
48848262 |
T |
|
| Q |
319 |
caccacatccattt-tcctcctcacctattagtaaaatcaaacgatccagcgnnnnnnnncactcctccaccaaacccattttccaatgaaacgaacccc |
417 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48848261 |
caccacatctatttatcctcctcacctattagtaaattcaaacgatccagcgaaggaaaacactcctccaccaaacccattttccaatgaaacgaacccc |
48848162 |
T |
|
| Q |
418 |
tacgccaactccacccaatatctcacacaacagacccctttccacccagtatccaaccaaatttgtcagttttcaacaaactatttaacaatagtttgac |
517 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48848161 |
tacgccaactccacccagtatctcacacaacagacccctttccacccagtatccaaccaaatttgtcagttttcaacaaactatttaacaatagtttgac |
48848062 |
T |
|
| Q |
518 |
cttatccaccccgaacaaaacaaatatctctccaccaaagacgaacctttg |
568 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48848061 |
cttatccaccccgaacaaaacaaatatctctccaccaaagacgaacctttg |
48848011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University