View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3319_low_24 (Length: 250)
Name: NF3319_low_24
Description: NF3319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3319_low_24 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 12321224 - 12320993
Alignment:
| Q |
16 |
attgacaggtctactttcttttttgactatttcttttctcatcctactgatttcttgcacgccctacaaattttggattaatataatctgaaaacgtaaa |
115 |
Q |
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| T |
12321224 |
attgacaggtctactttcatttttgactatttcttttttca-cctactgatttcttgcacgcgctagaaattttgaatta-tataatccaaaaacgtaaa |
12321127 |
T |
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| Q |
116 |
acacttaagaaaaacttctataacactccattttttaggattttataatctgaacagagcatacgagaagattgaaaggcgaaaaaagtaacagtcttat |
215 |
Q |
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| T |
12321126 |
acacttgagaaaaacttctataacactccattttttcggattttataatctgaatagagcatacgagaagattgaaaggcga-aaaagtaacagtcttat |
12321028 |
T |
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| Q |
216 |
tttctacaagacataccttggcttgaagaatactt |
250 |
Q |
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| T |
12321027 |
tttctacaagacataccttggcttgaagaatactt |
12320993 |
T |
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