View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3319_low_3 (Length: 482)
Name: NF3319_low_3
Description: NF3319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3319_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 22 - 478
Target Start/End: Original strand, 49642519 - 49642980
Alignment:
| Q |
22 |
gaaacaaagcttgaaacaccattttcttatgctatcatccatcattcatcacatcctattccgatggcaccatcaaaaccacacat------------ct |
109 |
Q |
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| T |
49642519 |
gaaacaaagcttgaaacaccattttcttatgctatcat-------tcatcacatcctattccgatggcaccatcaaaaccacacatctccatctacatct |
49642611 |
T |
|
| Q |
110 |
ccatcatcactatcttcctcctcctcttgaatccaaccaaatccgaagaaaataaaaaccttaaatcaacaacaacagaaaatgagtgcgaacaacgttg |
209 |
Q |
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| T |
49642612 |
ccatcatcactatcttcctcctcctcttgaatccaaccaaatccgaagaaaataaaaaccttaaatcaacaacaacagaaaatgagtgcgaacaacgttg |
49642711 |
T |
|
| Q |
210 |
gatccacataagaaaattaccaccaaaattcaacctagatctactctcaaattgttcagaatacacattcctagacgatttatgtccttacttagcaaac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49642712 |
gatccacataagaaaattaccaccaaaattcaacctagatctactctcaaattgttcagaatacacattcctagacgatttatgtccttacttagcaaac |
49642811 |
T |
|
| Q |
310 |
catggtttgggtcaaaaaacccataaccgttcccatagttggtaccgaaccgacccatccatgcttgaactcattttccatcgtcgtatgttagaatatc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49642812 |
catggtttgggtcaaaaaacccataaccgttcccatagttggtaccgaaccgacccatccatgcttgaactcattttccatcgtcgtatgttagaatatc |
49642911 |
T |
|
| Q |
410 |
catgcttaacggaagatcctaaaaccgctaacgccgtttatcttccttactacgctgcctttgcttctc |
478 |
Q |
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| T |
49642912 |
catgcttaacggaagatcctaaaaccgctaacgccgtttatcttccttactacgctgcctttgattctc |
49642980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 428
Target Start/End: Complemental strand, 6623275 - 6623170
Alignment:
| Q |
325 |
aaaacccataaccgttcccatagttggtaccgaaccgacccatccatgcttgaactcattttccatcgtcgtatgtt-agaatat--ccatgcttaacgg |
421 |
Q |
| |
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|||||||||||| ||||||||||||| || || |||||||| ||||||||||||||| ||| ||| |||||||| ||||||| ||||||||||| |
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| T |
6623275 |
aaaacccataacagttcccatagttgacaca-aatcgacccatacatgcttgaactcatattcaatccccgtatgttaagaatatccccatgcttaacaa |
6623177 |
T |
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| Q |
422 |
aagatcc |
428 |
Q |
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||||||| |
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| T |
6623176 |
aagatcc |
6623170 |
T |
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