View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3319_low_31 (Length: 203)
Name: NF3319_low_31
Description: NF3319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3319_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 32764235 - 32764059
Alignment:
| Q |
16 |
caataagctggtccaacattcgaatgaagtattataaataataaaaattgctatgattttacgcaaaatcggcttccttgaatatgcaagaaaattatag |
115 |
Q |
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| T |
32764235 |
caataagctggtccaacattcgaatgaagtattataaataataaaaattgctatgattttacgcaaaatcggcttccttgaagatgcaagaaaattatag |
32764136 |
T |
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| Q |
116 |
aagctaacaataaacatatataatctgtaacataaggttaataatataagattctttctctaatttgtatctctgct |
192 |
Q |
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| T |
32764135 |
aagctaacaataaacatatataatctgtaacataaggttaataatataagattctttctctaatttgtatctatgct |
32764059 |
T |
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Target: chr5; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 24 - 183
Target Start/End: Complemental strand, 32753123 - 32752964
Alignment:
| Q |
24 |
tggtccaacattcgaatgaagtattataaataataaaaattgctatgattttacgcaaaatcggcttccttga--atatgcaagaaaattatagaagcta |
121 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||| ||||||||| ||||||||| ||| |||| |||| ||||||| | |||| ||||| |
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| T |
32753123 |
tggtccaacattcgaaagaagtattataaataataaaagctgccatgattttatgcaaaatcgaattctttgaatatatacaagaaactaatagtagcta |
32753024 |
T |
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| Q |
122 |
acaataaacatatataatctgtaacataaggttaataatataagattctttctctaatttgt |
183 |
Q |
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| T |
32753023 |
accatgaac--atataatcagtaacataaggctaataatataaaattctttctctaatttgt |
32752964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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