View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3319_low_4 (Length: 451)
Name: NF3319_low_4
Description: NF3319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3319_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 22)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 13094556 - 13094998
Alignment:
| Q |
1 |
actaggtagtatatcagatttgattgaacagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatactagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13094556 |
actaggtagtatatcagatttgattgcacagatatgctcaaaaggtacaggaggataaagccttaaggtttcacatatagctccatggaggtatactagc |
13094655 |
T |
|
| Q |
101 |
ttatcaagatccacatccctcaaagtaatccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13094656 |
ttatcaagatccacatccctcaaagtaatccgataatcctctcgtgttaaccaattatctctgatctcttgaatgattttttcttccacaataggataag |
13094755 |
T |
|
| Q |
201 |
ttgaaagaagccagaaaaaccaactgagagctgaactaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatgcttctcactgat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
13094756 |
ttgaaagaagccagaaaaaccaactgagagctgaactaattgtaccatttccggcaaatatcatagtaaatgcagtgtctctaagatacttctcactgat |
13094855 |
T |
|
| Q |
301 |
ttctccctttccatgtccttctttctttagggcttttaccatgcctaaaatac-ttggtccatttcttcatcgctgcacttcctttgctcttcaccatgg |
399 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
13094856 |
ttctccctttccatgtccttcattctttagggcttttaccatgcctaaaaaacattggtacatttcttcatagctgcacttactttgctcttcaccatgg |
13094955 |
T |
|
| Q |
400 |
gaaaatgttatactttcatacaagaatcggtcaagatattctt |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13094956 |
gaaaatgttatactttcatacaagaatcggtcaagatattctt |
13094998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 13129985 - 13130427
Alignment:
| Q |
1 |
actaggtagtatatcagatttgattgaacagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatactagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13129985 |
actaggtagtatatcagatttgattgaacagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatactagc |
13130084 |
T |
|
| Q |
101 |
ttatcaagatccacatccctcaaagtaatccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataag |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13130085 |
ttatcaagatccacatgcctcaaagtaatccgattaccctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataag |
13130184 |
T |
|
| Q |
201 |
ttgaaagaagccagaaaaaccaactgagagctgaactaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatgcttctcactgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||||| |||||||||| |||||||||||| |
|
|
| T |
13130185 |
ttgaaagaagccagaaaaaccaactgagagctgaactaattgaaccatttccggcaaaaaacatagtaaatgcagtatctctaagatacttctcactgat |
13130284 |
T |
|
| Q |
301 |
ttctccctttccatgtccttctttctttagggcttttaccatgcctaaaatac-ttggtccatttcttcatcgctgcacttcctttgctcttcaccatgg |
399 |
Q |
| |
|
||| |||||||||| |||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13130285 |
ttcaccctttccatatccttcattctttagggcttttaccatgcctaaaaaacattggtccatttcttcatcgctgcacttgctttgctcttcaccatgg |
13130384 |
T |
|
| Q |
400 |
gaaaatgttatactttcatacaagaatcggtcaagatattctt |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13130385 |
gaaaatgttatactttcatacaagaatcggtcaagatattctt |
13130427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 13161678 - 13162120
Alignment:
| Q |
1 |
actaggtagtatatcagatttgattgaacagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatactagc |
100 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13161678 |
actaggtagtatatcggatttgattgcacagatatgctcaaaaggtataggtggataaagccttaaggtttcacatatagctccatggaggtatactagc |
13161777 |
T |
|
| Q |
101 |
ttatcaagatccacatccctcaaagtaatccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataag |
200 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13161778 |
ttatcaagaaccacatccctcaaaataatccgattatcctcttgtgttagccaattatctttgatctcttgaatgattttttcttccacaataggataag |
13161877 |
T |
|
| Q |
201 |
ttgaaagaagccagaaaaaccaactgagagctgaactaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatgcttctcactgat |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| |||||||| |||||||||| |||||||||||| |
|
|
| T |
13161878 |
ttgaaaggagccagaaaaaccaactgagagctgaactaattgaaccatttccggcaaacaccatagtgagtgcagtatctctaagatacttctcactgat |
13161977 |
T |
|
| Q |
301 |
ttctccctttccatgtccttctttctttagggcttttaccatgcctaaaatac-ttggtccatttcttcatcgctgcacttcctttgctcttcaccatgg |
399 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| | |||||| || ||||||||||||||| || |
|
|
| T |
13161978 |
ttccccctttccatatccttctttctttagggcttttaccatgcctaaaaaacattggtccatttcttcgttgctgcatttgctttgctcttcaccaagg |
13162077 |
T |
|
| Q |
400 |
gaaaatgttatactttcatacaagaatcggtcaagatattctt |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13162078 |
gaaaatgttatactttcatacaagaatcggtcaagatattctt |
13162120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 13007357 - 13007608
Alignment:
| Q |
1 |
actaggtagtatatcagatttgattgaacagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatactagc |
100 |
Q |
| |
|
||||||||||||||| || ||||||| |||||||||||||||||||| ||||||||||||||| | || |||||||| ||||||||||||||| |||||| |
|
|
| T |
13007357 |
actaggtagtatatcggaattgattgcacagatatgctcaaaaggtacaggaggataaagcctcatggcttcacatagagctccatggaggtacactagc |
13007456 |
T |
|
| Q |
101 |
ttatcaagatccacatccctcaaagtaatccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataag |
200 |
Q |
| |
|
||||||||||||||||| ||||||| | || |||| ||||||||||| ||| ||||||||||| |||||||| ||||| ||||||||||||||| || |
|
|
| T |
13007457 |
ttatcaagatccacatctctcaaaggagtctgattctcctcttgtgtgggccagttatctttgatttcttgaataattttggcttccacaataggatgag |
13007556 |
T |
|
| Q |
201 |
ttgaaagaagccagaaaaaccaactgagagctgaactaattgtaccatttcc |
252 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
13007557 |
ttgaaacaagccagaaaaaccaactgagacctgaactaattgtgccatttcc |
13007608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 13101157 - 13101494
Alignment:
| Q |
1 |
actaggtagtatatcagatttgattgaacagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatactagc |
100 |
Q |
| |
|
|||||| |||||||| |||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13101157 |
actaggaagtatatcggatttgattgaacatatatgctcaaaaggtacaggaggataaagcctcaaggtttcacatatagctccatggaggtacactagc |
13101256 |
T |
|
| Q |
101 |
ttatcaagatccacatccctcaaagtaatccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataag |
200 |
Q |
| |
|
|||||||||| | |||| ||| ||| |||| |||| ||||||||||| || ||||||||||| |||||||| ||||| ||||||||||||||| || |
|
|
| T |
13101257 |
ttatcaagatactcatctctcgaaggaatctgattctcctcttgtgtaggacagttatctttgatttcttgaattattttggcttccacaataggatgag |
13101356 |
T |
|
| Q |
201 |
ttgaaagaagccagaaaaaccaactgagagctgaactaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatgcttctcactgat |
300 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||||||| || |||||||| || || | | ||| | | || |||||||||||| ||||||| || |
|
|
| T |
13101357 |
tggaaacaagccagaaaaaccaactgagagctgaactaactgggccatttcctgctaaaaagagagtgattacattgtctctaagatacttctcatccat |
13101456 |
T |
|
| Q |
301 |
ttctccctttccatgtccttctttctttagggctttta |
338 |
Q |
| |
|
||| ||||||||| |||||| ||| |||| ||||||| |
|
|
| T |
13101457 |
ttccccctttccagatccttccttcgttagtgctttta |
13101494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 13070211 - 13069917
Alignment:
| Q |
1 |
actaggtagtatatcagatttgattgaacagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatactagc |
100 |
Q |
| |
|
||||||||||||||| |||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
13070211 |
actaggtagtatatcggatttgattgcacatatatgctcaaaaggtacaggaggataaagtctcaaggtttcacatatagctccatgaaggtacactaga |
13070112 |
T |
|
| Q |
101 |
ttatcaagatccacatccctcaaagtaatccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataag |
200 |
Q |
| |
|
||||||||||||||||| ||| ||| | || |||| ||||||||||| ||| |||||||| || |||||||| ||||| ||||||||||||||| || |
|
|
| T |
13070111 |
ttatcaagatccacatctctccaaggagtctgattctcctcttgtgtgggccagttatcttttatttcttgaataattttggcttccacaataggatgag |
13070012 |
T |
|
| Q |
201 |
ttgaaagaagccagaaaaaccaactgagagctgaactaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatgcttctca |
295 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| ||| ||| |||||||| || || | | || |||||| |||||||||||| ||||||| |
|
|
| T |
13070011 |
ttgaaacaagccagaaaaaccaactgagacctgaagtaactgtgccatttcctgctaaaaagagagagagtgcattgtctctaagatacttctca |
13069917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 13204616 - 13205060
Alignment:
| Q |
1 |
actaggtagtatatcagatttgattgaacagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatactagc |
100 |
Q |
| |
|
||||||||||||||| |||||||||| ||| |||||||||||||||| |||||||||||| || |||| |||||||||||||||||| ||||| |||||| |
|
|
| T |
13204616 |
actaggtagtatatcggatttgattgcacatatatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatgaaggtacactagc |
13204715 |
T |
|
| Q |
101 |
ttatcaagatccacatccctcaaagtaatccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataag |
200 |
Q |
| |
|
|||||||||| | |||| ||| ||| |||| |||| ||||||||||| || ||||||||||| |||||||| ||||| ||||||||||||||| || |
|
|
| T |
13204716 |
ttatcaagatactcatctctcgaaggaatctgattctcctcttgtgtaggacagttatctttgatttcttgaattattttggcttccacaataggatgag |
13204815 |
T |
|
| Q |
201 |
ttgaaagaagccagaaaaaccaactgagagctgaactaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatgcttctcactgat |
300 |
Q |
| |
|
| |||| |||||| ||||||||||| ||| |||||||| || |||| |||| || || | | || |||| | |||||||||| |||| |||| || |
|
|
| T |
13204816 |
tggaaacaagccaaaaaaaccaacttagacctgaactagctggaccacttcctgctaagaagagagagagtgtatcgtctctaagaaacttcccactcat |
13204915 |
T |
|
| Q |
301 |
ttctccctttccatgtccttctttctttagggcttttaccatgcctaaaatac-ttggtccatttcttc---atcgctgcacttcctttgctcttcacca |
396 |
Q |
| |
|
|||| ||||||||| |||||| ||| | | |||||| || | | ||| || || |||||||||||| | || || ||||||||||||||| |
|
|
| T |
13204916 |
ttcttcctttccatatccttccttcgtccgagctttttcccggacaaaataacattcgtccatttcttcactaccgttgtacttcctttgctctt---gt |
13205012 |
T |
|
| Q |
397 |
tgggaaaatgttatactttcatacaagaatcggtcaagatattcttcg |
444 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
13205013 |
ttggaaaatgttatactttcatataagaatcggtcaagattttcttcg |
13205060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 7 - 338
Target Start/End: Original strand, 19727316 - 19727647
Alignment:
| Q |
7 |
tagtatatcagatttgattgaacagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatactagcttatca |
106 |
Q |
| |
|
|||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || |||| || ||||| | |||| |||||||| |||||||||||| |
|
|
| T |
19727316 |
tagtatatgagatttgattgcacatatatgctcaaaaggtacaggaggataaagtctcaaggcttaacatagatctccgtggaggtacactagcttatca |
19727415 |
T |
|
| Q |
107 |
agatccacatccctcaaagtaatccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaa |
206 |
Q |
| |
|
||||||||||| ||||||| | || | || ||||||||||| ||| ||||||||||| |||||||| ||||| |||| |||||||||| ||| |||| |
|
|
| T |
19727416 |
agatccacatctctcaaaggagtctggttctcctcttgtgtgggccagttatctttgatttcttgaataattttggcttcgacaataggatgagtcgaaa |
19727515 |
T |
|
| Q |
207 |
gaagccagaaaaaccaactgagagctgaactaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatgcttctcactgatttctcc |
306 |
Q |
| |
|
|||||| ||||||||||||||| ||| ||||| || |||||||| || || | | ||| ||| | |||||||||||| ||||||| | ||||| || |
|
|
| T |
19727516 |
caagccaaaaaaaccaactgagacctgtactaactgggccatttcctgctaaaaagagagtgagtaaattgtctctaagatacttctcattcatttcccc |
19727615 |
T |
|
| Q |
307 |
ctttccatgtccttctttctttagggctttta |
338 |
Q |
| |
|
||||||| |||||| ||| |||| ||||||| |
|
|
| T |
19727616 |
ctttccagatccttccttcattagtgctttta |
19727647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 30368143 - 30367847
Alignment:
| Q |
1 |
actaggtagtatatcagatttgattgaacagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatactagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| |||||||||||| || |||||| | ||| | || |||||||||||||||||||||||| |||||| |
|
|
| T |
30368143 |
actaggtagtatatcagatttgattgcactgataagctcaaaaggtacagtaggatacaacctcatggattcacatatagctccatggaggtagactagc |
30368044 |
T |
|
| Q |
101 |
ttatcaagatccacatccctcaaagtaatccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataag |
200 |
Q |
| |
|
|||||||| | || | |||| |||| ||| || | || || || ||||||||||||||||||||||| ||||| ||||||||||||||| || |
|
|
| T |
30368043 |
ttatcaaggctttccaccattgaagttatccaattctcatgttttgatacacaattatctttgatctcttgaataattttggcttccacaataggatgag |
30367944 |
T |
|
| Q |
201 |
ttgaaagaagccagaaaaaccaactgagagctgaactaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatgcttctcact |
297 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||| ||| ||||| || || || | | || |||||| |||||||||||| ||||||||| |
|
|
| T |
30367943 |
ttgaaacaagccagaaaaaccaactgagacttgaactaagtgtgccattacctgctaacaaaagagagagtgcattgtctctaagatacttctcact |
30367847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 13271743 - 13271997
Alignment:
| Q |
1 |
actaggtagtatatcagatttgattgaacagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatactagc |
100 |
Q |
| |
|
|||||||||||||||||| || | || ||| | || ||||| ||||||||||||||||| || |||||||||||||||||| |||| ||||| | ||| |
|
|
| T |
13271743 |
actaggtagtatatcagaattaactgcacacttgtgatcaaatggtataggaggataaagtctcaaggtttcacatatagctgcatgaaggtaaatcagc |
13271842 |
T |
|
| Q |
101 |
ttatcaagatccacatccctcaaagta---atccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggat |
197 |
Q |
| |
|
||||||| | || | | ||| || ||| ||| ||||||||||||| |||| |||||||||||||||||| | |||| |||||||| |||||| |
|
|
| T |
13271843 |
ttatcaatgttttcaacatttaaattattgatcaaattctcctcttgtgttagacaatgatctttgatctcttgaataagttttgcttccacattaggat |
13271942 |
T |
|
| Q |
198 |
aagttgaaagaagccagaaaaaccaactgagagctgaactaattgtaccatttcc |
252 |
Q |
| |
|
|||||||| |||||| || |||||||| ||| ||||||||| ||| |||||||| |
|
|
| T |
13271943 |
gagttgaaacaagccaaaagaaccaacttagacctgaactaactgttccatttcc |
13271997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 137 - 252
Target Start/End: Complemental strand, 13244417 - 13244302
Alignment:
| Q |
137 |
tcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaac |
236 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||| |||||||| |||||| || |||||||| ||| |||||| |
|
|
| T |
13244417 |
tcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccccaataggatgagttgaaacaagccaaaagaaccaacttagacctgaac |
13244318 |
T |
|
| Q |
237 |
taattgtaccatttcc |
252 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
13244317 |
taattgttccatttcc |
13244302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 19279203 - 19278952
Alignment:
| Q |
1 |
actaggtagtatatcagatttgattgaacagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatactagc |
100 |
Q |
| |
|
||||||||||||||| || || | || ||| | || ||||| |||| ||| |||||||||||||||| |||||||||||||||||| || || |||||| |
|
|
| T |
19279203 |
actaggtagtatatcggaattaactgcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcacatatagctccatgaagataaactagc |
19279104 |
T |
|
| Q |
101 |
ttatcaagatccacatccctcaaa---gtaatccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggat |
197 |
Q |
| |
|
|||||||| || | || ||| || ||| ||||||||||| |||||| || ||| | |||||||||||||| |||||| |||| |||||||||| |
|
|
| T |
19279103 |
ttatcaagctctttcacactaaaatttgtgatcaaattatcctcttttgttaaacagttaaccttgatctcttgaataatttttgcttcgacaataggat |
19279004 |
T |
|
| Q |
198 |
aagttgaaagaagccagaaaaaccaactgagagctgaactaattgtaccatt |
249 |
Q |
| |
|
|||||| | ||||| || |||||| ||||| | ||||||||||| ||||| |
|
|
| T |
19279003 |
gagttgatacgagccaaaagaaccaattgagacccgaactaattgttccatt |
19278952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 13065248 - 13064952
Alignment:
| Q |
1 |
actaggtagtatatcagatttgattgaacagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatactagc |
100 |
Q |
| |
|
|||||| |||||||||| |||||||| | | | ||||| | ||||| |||||||||||||||||||| ||||||||||||||| |||||||| | ||| |
|
|
| T |
13065248 |
actaggaagtatatcagctttgattgcaaacttttgctcgataggtacaggaggataaagccttaaggcttcacatatagctccgtggaggtaaattagt |
13065149 |
T |
|
| Q |
101 |
ttatcaagatccacatccctcaaagtaatccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataag |
200 |
Q |
| |
|
|||||||| | | | | |||||||| || || || | | || ||||||||||| ||||||||||| || || ||||||||| ||||| | |
|
|
| T |
13065148 |
ttatcaagcttttccacaattgaagtaatcaagttttcatcatcagatagacaattatctttcatctcttgaataatcttggcttccacaacaggatgac |
13065049 |
T |
|
| Q |
201 |
ttgaaagaagccagaaaaaccaactgagagctgaactaattgtaccatttccggcaaatatcatagtaagtgcagtgtctctaagatgcttctcact |
297 |
Q |
| |
|
||||| |||||| || |||||||||||| ||||||||| ||| || ||||| || || | | | | | ||||||||||||||||| ||||||||| |
|
|
| T |
13065048 |
atgaaacaagccaaaagaaccaactgagacctgaactaactgtgccgtttcccgctaacaatagattgactgcagtgtctctaagatacttctcact |
13064952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 13086264 - 13086518
Alignment:
| Q |
1 |
actaggtagtatatcagatttgattgaacagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatactagc |
100 |
Q |
| |
|
||||||||||||||||| |||||||| ||| | |||| ||| |||| ||||||||||||||| || | |||||||||||||||||| ||||| ||||| |
|
|
| T |
13086264 |
actaggtagtatatcagctttgattgcacacttgtgctgaaatggtacaggaggataaagcctcaatgcttcacatatagctccatgaaggtacactagt |
13086363 |
T |
|
| Q |
101 |
ttatcaagatccacatccctcaa---agtaatccgattatcctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggat |
197 |
Q |
| |
|
|||| ||| | || | || || ||| | | ||||||||| |||| || ||||||||||| ||||||||||| ||||| ||||||| || || |
|
|
| T |
13086364 |
ttattaagcttttcaactcttaaattagtgaccaaattatcctcatgtgatagacaattatcttttatctcttgaattattttagcttccactatgaaat |
13086463 |
T |
|
| Q |
198 |
aagttgaaagaagccagaaaaaccaactgagagctgaactaattgtaccatttcc |
252 |
Q |
| |
|
|||||||| |||||| | |||||||| ||| ||||||||| ||| ||| |||| |
|
|
| T |
13086464 |
gagttgaaacaagccaagagaaccaacttagacctgaactaactgttccacttcc |
13086518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 339
Target Start/End: Original strand, 13214132 - 13214314
Alignment:
| Q |
157 |
atctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaactaattgtaccatttccggca |
256 |
Q |
| |
|
|||||| || |||||||| ||||| ||||||||||| ||| |||||||| |||||||||||||||| ||||| |||||| || || |||||||| || |
|
|
| T |
13214132 |
atcttttatttcttgaataattttagcttccacaataagatgagttgaaacaagccagaaaaaccaaatgagacctgaacgaactgggccatttcctgct |
13214231 |
T |
|
| Q |
257 |
aatatcatagtaagtgcagtgtctctaagatgcttctcactgatttctccctttccatgtccttctttctttagggcttttac |
339 |
Q |
| |
|
|| | | ||| | ||| |||||||||||| ||||||| ||||| ||||||||| |||||| ||| |||| |||||||| |
|
|
| T |
13214232 |
aaaaagagagtgatcgcattgtctctaagatacttctcatccatttccccctttccaaatccttccttcattagtgcttttac |
13214314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 153 - 252
Target Start/End: Complemental strand, 12963791 - 12963692
Alignment:
| Q |
153 |
aattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaactaattgtaccatttcc |
252 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||||||||||||| |||||||| |||||| || |||||||| ||| ||||||||| ||| ||| |||| |
|
|
| T |
12963791 |
aattatctttaatctcttgaataattttagtttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaactgttccacttcc |
12963692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 12963910 - 12963803
Alignment:
| Q |
1 |
actaggtagtatatcagatttgattgaacagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatactagc |
100 |
Q |
| |
|
|||||||| |||||| ||||| |||| ||| | || ||||| ||||||||||||||||||||||| | |||||| ||||||||||| || || || ||| |
|
|
| T |
12963910 |
actaggtaatatatctgatttaattgcacacttgtgttcaaatggtataggaggataaagccttaaagcttcacaaatagctccatgaagataaacaagc |
12963811 |
T |
|
| Q |
101 |
ttatcaag |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
12963810 |
ttatcaag |
12963803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 444
Target Start/End: Original strand, 13010797 - 13010842
Alignment:
| Q |
399 |
ggaaaatgttatactttcatacaagaatcggtcaagatattcttcg |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13010797 |
ggaaaatgttatactttcatacaagaatcggtcaagattttcttcg |
13010842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 52 - 257
Target Start/End: Complemental strand, 13080849 - 13080641
Alignment:
| Q |
52 |
aggataaagccttaaggtttcacatatagctccatggaggtatactagcttatcaag---atccacatccctcaa--agtaatccgattatcctcttgtg |
146 |
Q |
| |
|
|||||| |||||||||| ||||||||| |||||||| ||||| |||||||||||||| |||||| ||| || || || ||| || || ||| |
|
|
| T |
13080849 |
aggatatagccttaaggcttcacatatggctccatgaaggtaaactagcttatcaagctcttccaca--cctaaattagcgataaaattctcatcgtgtt |
13080752 |
T |
|
| Q |
147 |
ttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaactaattgtacc |
246 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| | || || |||||| ||||||| ||||| ||||||||| ||||| ||| ||||||||| || |
|
|
| T |
13080751 |
ttaaacaattatctttgatctcttgaataattttaccatctaccctaggatgcgttgaaaccagccaaaaaaaccaagtgagacctgtactaattgttcc |
13080652 |
T |
|
| Q |
247 |
atttccggcaa |
257 |
Q |
| |
|
|||||| |||| |
|
|
| T |
13080651 |
atttcctgcaa |
13080641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 13244556 - 13244450
Alignment:
| Q |
1 |
actaggtagtatatcagatttgattgaacagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatactagc |
100 |
Q |
| |
|
|||||||||||||||||||||||| | || | |||| ||| | | ||||||||| ||||| |||||||||||||| |||||||| ||||| || ||| |
|
|
| T |
13244556 |
actaggtagtatatcagatttgatagcgcacttgtgctgaaatgccagaggaggatatagcctcaaggtttcacatatggctccatgaaggtaaacaagc |
13244457 |
T |
|
| Q |
101 |
ttatcaa |
107 |
Q |
| |
|
||||||| |
|
|
| T |
13244456 |
ttatcaa |
13244450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 399 - 444
Target Start/End: Complemental strand, 13069824 - 13069779
Alignment:
| Q |
399 |
ggaaaatgttatactttcatacaagaatcggtcaagatattcttcg |
444 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||| ||||||| |
|
|
| T |
13069824 |
ggaaaatgttataccttcatacaagaaacggtcaagattttcttcg |
13069779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 30367738 - 30367697
Alignment:
| Q |
402 |
aaatgttatactttcatacaagaatcggtcaagatattcttc |
443 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
30367738 |
aaatgttacactttcatacaagaatcggtcaagattttcttc |
30367697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 252
Target Start/End: Complemental strand, 31396557 - 31396459
Alignment:
| Q |
155 |
ttatctttgatctcttgaatgattttttcttccacaataggataagttgaaag-aagccagaaaaaccaactgagagctgaactaattgtaccatttcc |
252 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||| |||||| |||||||| ||||||||||||||||| |||| |||||||||||| |||||||| |
|
|
| T |
31396557 |
ttatcttgaatctcttgaataattttggcttccacattaggatgagttgaaaacaagccagaaaaaccaaccgagacttgaactaattgtgccatttcc |
31396459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 442
Target Start/End: Complemental strand, 31396310 - 31396269
Alignment:
| Q |
401 |
aaaatgttatactttcatacaagaatcggtcaagatattctt |
442 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
31396310 |
aaaatgttatactgtcatacaagaatcggttaagattttctt |
31396269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 36668314 - 36668368
Alignment:
| Q |
33 |
tatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatg |
87 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||| |||||||| ||||||||| |
|
|
| T |
36668314 |
tatgctcaaaaggtattggtggataaagccttaaggcttcacataaagctccatg |
36668368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 12164462 - 12164516
Alignment:
| Q |
33 |
tatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatg |
87 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||| |||||||| ||||||||| |
|
|
| T |
12164462 |
tatgctcaaaaggtatcggcggataaagcctcaaggcttcacataaagctccatg |
12164516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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