View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3319_low_8 (Length: 373)
Name: NF3319_low_8
Description: NF3319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3319_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 37801200 - 37801558
Alignment:
| Q |
1 |
atctgttggataatcaaaacgttgccatagaggatttgatgcatcatcattaggcctagttcttaaaacgagattgccggtatctaagaggagagctaca |
100 |
Q |
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|||||| |||| |||||||| |||||||||||||||||| ||||||||| ||||||| ||||||||| ||||| || ||||||| || | ||||||| |
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| T |
37801200 |
atctgtaggatgatcaaaactctgccatagaggatttgatacatcatcatcaggcctatgtcttaaaacaagatttccagtatctagaagcatagctaca |
37801299 |
T |
|
| Q |
101 |
acagaacctaacgtaggaaaactcatgtttgttgaccaaacttgttttgaagactcattcaatagaactaaattacccgctgaaatttttaaggtagcag |
200 |
Q |
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|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37801300 |
acagaatctgacttaggaaaactcatgtttgttgaccaaacttgttttgaagactcattcaatagaactaaattaccagctgaaatttttaaggtagcag |
37801399 |
T |
|
| Q |
201 |
tgtttttattagagacagggttgtctctgttggctacccaaacaattgtttgcggaaagacctttttgtaccatattcctatgtagtagttagaagaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37801400 |
tgtttttattagagacagggttgtctctgttggctacccaaacaattgtttgtggaaagacatttttgtaccatattcctatgtagtagttagaagaatt |
37801499 |
T |
|
| Q |
301 |
acctggtttaaagaaacccaattcaaagattcttcttccttcagagactagagtttgat |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37801500 |
acctggtttaaagaaacccaattcaaagattcttcttccttcagagactagagtttgat |
37801558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 37764552 - 37764221
Alignment:
| Q |
1 |
atctgttggataatcaaaacgttgccatagaggatttgatgcatcatcattaggcctagttcttaaaacgagattgccggtatctaagaggagagctaca |
100 |
Q |
| |
|
||||| ||||| |||||||| |||||||||| || | || ||||||||||||||||| || | ||||| ||||| || ||||||| || | |||||| |
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| T |
37764552 |
atctgctggatgatcaaaactctgccatagagaatctaatacatcatcattaggcctatttttcaaaacaagatttccagtatctagaagcatggctaca |
37764453 |
T |
|
| Q |
101 |
acagaacctaacgtaggaaaactcatgtttgttgaccaaacttgttttgaagactcattcaatagaactaaattacccgctgaaatttttaaggtagcag |
200 |
Q |
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|||||| || || |||||| | ||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||| || | |
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| T |
37764452 |
acagaatctgacttaggaacattcatgtttgttgaccaaacttgttttgaagactcatttaatataactaaattaccatctgagatttttaaggtggcgg |
37764353 |
T |
|
| Q |
201 |
tgtttttattagagacagggttgtctctgttggctacccaaacaattgtttgcggaaagacctttttgtaccatattcctatgtagtagttagaagaatt |
300 |
Q |
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||||||| | ||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37764352 |
tgtttttgtcagagacaggattgtctctgttggctacccaaacaattgtttgttgaatgacctttttgtaccatattcctatgtagtagttagaggaatt |
37764253 |
T |
|
| Q |
301 |
acctggtttaaagaaacccaattcaaagattc |
332 |
Q |
| |
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||||||||| |||||||| | ||||||||||| |
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| T |
37764252 |
acctggtttgaagaaacctagttcaaagattc |
37764221 |
T |
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