View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3319_low_9 (Length: 367)
Name: NF3319_low_9
Description: NF3319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3319_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 39293645 - 39293965
Alignment:
| Q |
11 |
cagagaaattgttgtgctgttagaaagagtcatag-gagacgtaaatatttagtggattactaataaaatttcatgttctgtttagattttttaattgaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39293645 |
cagagaaattgttgtgctgttagaaagagtcatagtgagacgtaaatatttagtggattactaataaaatttcatgttctgtttagattttttaattgaa |
39293744 |
T |
|
| Q |
110 |
ggattatacgtactcatatctttattatatcgatctatttctcttttgact---gactgagtcatatatagctgcctaaacgtgttattttgattcctat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39293745 |
ggattatacgtactcatatctttattatatcgatctatttctcttttgactcatgactgagtcatatatagctgcctaaacgtgttattttgattcctat |
39293844 |
T |
|
| Q |
207 |
ttaaacgtaagagtttgtacattacttgttaatgaatccttcttaacatgttttgtctgtcgatgagtaagggaaacgataggcacaatggtttgatcat |
306 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39293845 |
ttaaacgttagagtttgtacattacttgttaatgaatccttcttaacatgttttgtctgtcgatgagtaagggaaacgataggcacaatggtttgatcat |
39293944 |
T |
|
| Q |
307 |
tccaaagacaaagaatgccac |
327 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
39293945 |
tccaaagacaaagaatgccac |
39293965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University