View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3320_high_11 (Length: 384)
Name: NF3320_high_11
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 1528294 - 1528669
Alignment:
| Q |
1 |
gcttagggttactgcatcttgacttgggacattgctataatgtgacagagaatgtagtcatgcaagttgtagaaaactgcacacaactgagagg--taaa |
98 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1528294 |
gctttgggttactgcatcttgacttgggacattgctataatgagacagagaatggagtcatgcaagttgtagaaaactgcacacaactgagagagataaa |
1528393 |
T |
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| Q |
99 |
tttgcaaggttgttgtaaagtggttgctgatgttgttaaatcaatggtatttgtaaggtcgtcacttagaaagataatggctccgccttgttttcgttgt |
198 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
1528394 |
tttgcagggttgttgtaaagtggttgctgatgttgttaaatcaatggtatttataaggtcgtcacttagaaagatagtggctccgccttgttttcattgt |
1528493 |
T |
|
| Q |
199 |
aatgacagaaagcggaaatttttcttgcgtcatggatgccttgtttgctagtatgttggaagtgatctgctaaagtttgaattatgaaaagcaagtgaaa |
298 |
Q |
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| T |
1528494 |
agtgacagaaagcggaaatttatcttgcgtcatggatgccttgtttgctagtatgttggaactgatctgctaaagtttgaattatgaaaagtaagtaaaa |
1528593 |
T |
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| Q |
299 |
tattcatatttttaggagtaacacctacattttatttgttgttgaagatgtcagcttaaatttcttgtattttctt |
374 |
Q |
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| T |
1528594 |
tattcatatttttaggagttacatctacattttttttgttgttgaagatgtcagcttaaatttcttgtattttctt |
1528669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 12120233 - 12120366
Alignment:
| Q |
1 |
gcttagggttactgcatcttgacttgggacattgctataatgtgacagagaatgtagtcatgcaagttgtagaaaactgcacacaact--gagaggtaaa |
98 |
Q |
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| T |
12120233 |
gctttgggttactgcatcttgacttgggacattgctataatgtgacagagaatggagtcatgcaaattgtagaaaactgcacacaactgagagagataaa |
12120332 |
T |
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| Q |
99 |
tttgcaaggttgttgtaaagtggttgctgatgtt |
132 |
Q |
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| T |
12120333 |
tttgcagggttgttgtaaagtggttgctgatgtt |
12120366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 6006335 - 6006058
Alignment:
| Q |
1 |
gcttagggttactgcatcttgacttgggacattgctataatgtgacagagaatgtagtcatgcaagttgtagaaaactgcacacaactgagagg--taaa |
98 |
Q |
| |
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|||| ||| ||||||| ||||| ||||||| ||| ||| |||| ||| |||| | ||| |||||||| ||||||||||||| |||| |||||| |||| |
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| T |
6006335 |
gctttgggctactgcaacttgatttgggacgttgttatgatgtcacaaagaagggagtgatgcaagtcgtagaaaactgcaaacaattgagagagataaa |
6006236 |
T |
|
| Q |
99 |
tttgcaaggttgttgtaaagtggttgctgatgttgttaaatcaatggtatttgtaaggtcgtcacttagaaagataatggctccgccttgttttcgttgt |
198 |
Q |
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|||||| | |||| ||||||||| |||||||||||| | | ||||||||| |||| | ||| | |||||||||| ||||| ||| ||||| ||||| |
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| T |
6006235 |
tttgcaggattgtcataaagtggtagctgatgttgttgacttgatggtatttacaaggccatcattgagaaagataactgctccacctggtttttgttgt |
6006136 |
T |
|
| Q |
199 |
aatgacagaaagcggaaatttttcttgcgtcatggatgccttgtttgctagtatgttggaagtgatctgctaaagttt |
276 |
Q |
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| T |
6006135 |
agtgacagcaagcgaaaactcttcttgcgtcatggatgccttgtttgctagtattttggagctgctctgctgaagttt |
6006058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 12120373 - 12120435
Alignment:
| Q |
210 |
gcggaaatttttcttgcgtcatggatgccttgtttgctagtatgttggaagtgatctgctaaa |
272 |
Q |
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| T |
12120373 |
gcggaaatttttcttgcgtcatggatgccttgtgtgctagtatgttggaagtgatctgctaaa |
12120435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 10579968 - 10580000
Alignment:
| Q |
220 |
ttcttgcgtcatggatgccttgtttgctagtat |
252 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
10579968 |
ttcttgcgtcatggatgccttctttgctagtat |
10580000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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