View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3320_high_22 (Length: 296)

Name: NF3320_high_22
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3320_high_22
NF3320_high_22
[»] chr3 (1 HSPs)
chr3 (12-296)||(46072125-46072392)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 296
Target Start/End: Complemental strand, 46072392 - 46072125
Alignment:
Q  12 atgaagaagatgcaactttaggtattttaaaccgtgttcgaatcagctggggtatatcaactctcagcctctatactgaagtgggagatatattttctgt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||    
T  46072392 atgaagaagatgcaactttaggtattttaaaccgtgttcgaatcagctggggtatatcaactctcagcctctata-----------------ttttctgt 46072310  T
Q  112 taagctgccatatttttcattgtaaataaagatgaaaaatttgtatagattcctttattttgtagatgtgttctgccagttttctttatcaaaaggaata 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46072309 taagctgccatatttttcattgtaaataaagatgaaaaatttgtatagattcctttattttgtagatgtgttctgccagttttctttatcaaaaggaata 46072210  T
Q  212 tcattcaatatttgcatataatttaattaagtttatacactgctatgaatagttcttcaaatctctcggggtatccactgtgcgt 296  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46072209 tcattcaatatttgcatataatttaattaattttacacactgctatgaatagttcttcaaatctctcggggtatccactatgcgt 46072125  T

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