View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3320_high_24 (Length: 251)
Name: NF3320_high_24
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_high_24 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 45710793 - 45711037
Alignment:
| Q |
7 |
tcgaagaatattctattctcacttgtaatggtcttaaaattagcaaagatcatatttaaaacagtaagtaattttaatgtgtatcaatagtaaattaata |
106 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45710793 |
tcgaacaatattctgttctcacttgtaatggtcttaaaattagcaaagatcatatttaaaacagtaagtaattttaatgtgtatcaatagtaaattaata |
45710892 |
T |
|
| Q |
107 |
tttactcaaatatgtcacttgatcaaattttgaaagannnnnnnatggttagaaaatgttgttgttaaaacaggttagtggtgggtaaatcatgtctggt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45710893 |
tttactcaaatatgtcacttgatcaaattttgaaagatttttttatggttagaaaatgttgttgttaaaacaggttagtggtgggtaaatcatgtctggt |
45710992 |
T |
|
| Q |
207 |
cnnnnnnnnntattgggttggagccgtcgaactattcatacaaat |
251 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
45710993 |
caaaaaaaaatcttgggttggagccgtcgaactattcatacaaat |
45711037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University