View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3320_high_25 (Length: 251)
Name: NF3320_high_25
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 45711540 - 45711319
Alignment:
| Q |
12 |
attatatactttatatatcagtcatatttactaaactatttggattagnnnnnnnggttaaacgtcaataagccaaaccattatatttgtgtgtgtactg |
111 |
Q |
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| T |
45711540 |
attatatactttatatatcagtcatatttactaaactatttggattagtttttttggttaaacgtcaataagccaaaccattatatttgtgtgtgtactg |
45711441 |
T |
|
| Q |
112 |
gctcaaagtgagacaaaaatcattgttttaggctcacgaacttcatataacaaaaagactcaattacctaaaacttatnnnnnnntcttctcctaaagtt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
45711440 |
gctcaaagtgagacaaaaatcattgttttaggctcacgaacttcatataacaaaaatactcaattacctaaaacttataaaaaaatcttctcctaaagtt |
45711341 |
T |
|
| Q |
212 |
tactataatcagacgtgcccta |
233 |
Q |
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|||||||||||||||||||||| |
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| T |
45711340 |
tactataatcagacgtgcccta |
45711319 |
T |
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