View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3320_high_28 (Length: 245)
Name: NF3320_high_28
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_high_28 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 1503781 - 1503550
Alignment:
| Q |
18 |
ctcctcaacccactcaggaactatatagccaatactgcaatgtggacatggcttctcattgaaccttatctgatatccattgctaaaaatataaggttga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1503781 |
ctcctcaacccactcaggaactatatagccaatactgcaatgtggacatggcttctcattgaaccttatctgatatccattgctaaaaatataaggttga |
1503682 |
T |
|
| Q |
118 |
gcagtaacaagaaacacactcttgaaaccaattcctgaaattcaatcataaaagagattctgtcacatatttgcatcat---cttcaatttggc-tacta |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
1503681 |
gcagtaacaagaaacacactcttgaaaccaattcctgaaattcaatcataaaagagattctgtcacatatttgcatcatcttcttcaatttggcttacta |
1503582 |
T |
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| Q |
214 |
taatcaatggatatccaaagtcaagcataatt |
245 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
1503581 |
taatcaatggatatccaaagtcaagcataatt |
1503550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 3009469 - 3009266
Alignment:
| Q |
18 |
ctcctcaacccactcaggaactatatagccaatactgcaatgtggacatggcttctcattgaaccttatctgatatccattgctaaaaatataaggttga |
117 |
Q |
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|||||||||||| |||||||||| ||| ||||| |||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
3009469 |
ctcctcaacccattcaggaactacatacccaattctgcaatgtggacaaggcctctcattgaaccttatatgatatccattgctaaaaatataaggctga |
3009370 |
T |
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| Q |
118 |
gcagtaacaagaaacacactcttgaaaccaattcctgaaattc-aatcataaaagagattctgtcacatatttgc---atcatcttcaatttggctacta |
213 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| || |||| |||||||| ||||| | |||| | ||| |||||||||||||||||| |
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| T |
3009369 |
gcagtaacaagaaacacactcttgaaaccaattcctgtaattcaaaacatagaagagattatgtcagagatttccattatcttcttcaatttggctacta |
3009270 |
T |
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| Q |
214 |
taat |
217 |
Q |
| |
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|||| |
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| T |
3009269 |
taat |
3009266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 2923939 - 2924103
Alignment:
| Q |
18 |
ctcctcaacccactcaggaactatatagccaatactgcaatgtggacatggcttctcattgaaccttatctgatatccattgctaaaaatataaggttga |
117 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
2923939 |
ctcctcaacccattcaggaactatatacccaagactgcaatgtggacaaggcttctcattgaaccttatctgatatccattgctaaaaacataaggctga |
2924038 |
T |
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| Q |
118 |
gcagtaacaagaaacacactcttgaaaccaattcctgaaattcaatcataaaagagattctgtca |
182 |
Q |
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|| ||||| |||||||||||||||||||||||||||||||||||| |||| | ||||||||||| |
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| T |
2924039 |
gccgtaaccagaaacacactcttgaaaccaattcctgaaattcaaccatagcaaagattctgtca |
2924103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 2933304 - 2933498
Alignment:
| Q |
18 |
ctcctcaacccactcaggaactatatagccaatactgcaatgtggacatggcttctcattgaaccttatctgatatccattgctaaaaatataaggttga |
117 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| ||||||||||| ||| ||| ||||| ||||||||||||||||||| |||||||| |||||||| ||| |
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| T |
2933304 |
ctcctcaacccattcaggaactatatacccaagactgcaatgtgtacagggcctctcactgaaccttatctgatatccgttgctaaatatataaggctga |
2933403 |
T |
|
| Q |
118 |
gcagtaacaagaaacacactcttgaaaccaattcctgaaattcaatcataaaagagattctgtcacatatttgcatcatcttcaatttggctact |
212 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||| | ||||| ||||| | ||||| ||||||| |||||||||||| |
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| T |
2933404 |
gcagtaacaagaaacacactcttgaaaccaatacctgaaattcaaccataggaaagattatgtcaaagatttgtatcatctaaaatttggctact |
2933498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 2949939 - 2950083
Alignment:
| Q |
18 |
ctcctcaacccactcaggaactatatagccaatactgcaatgtggacatggcttctcattgaaccttatctgatatccattgctaaaaatataaggttga |
117 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| ||||||||||||||| ||| |||| |||||||| ||||||||||| ||||||||||||||||| ||| |
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| T |
2949939 |
ctcctcaacccattcaggaactatatacccaagactgcaatgtggacaaggcctctcgttgaacctgatctgatatccgttgctaaaaatataaggctga |
2950038 |
T |
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| Q |
118 |
gcagtaacaagaaacacactcttgaaaccaattcctgaaattcaa |
162 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2950039 |
gcagtaacaagaaacacactcttgaaaccaattcctgaaattcaa |
2950083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 37798790 - 37798946
Alignment:
| Q |
18 |
ctcctcaacccactcaggaactatatagccaatactgcaatgtggacatggcttctcattgaaccttatctgatatccattgctaaaaatataaggttga |
117 |
Q |
| |
|
|||||||||||| ||||||||| |||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
37798790 |
ctcctcaacccattcaggaactgtatacccaagactgcaatgtggacaaggcttctcattgaaccttatctgatatccattgctaaaaatatacggctgc |
37798889 |
T |
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| Q |
118 |
gcagtaacaagaaacacactcttgaaaccaattcctgaaattcaatcataaaagaga |
174 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
37798890 |
atggtaaccagaaacacactcttgaaaccaattcctgaaattcaaccatataagaga |
37798946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 28027490 - 28027687
Alignment:
| Q |
18 |
ctcctcaacccactcaggaactatatagccaatactgcaatgtggacatggcttctcattgaaccttatctgatatccattgctaaaaatataaggttga |
117 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
28027490 |
ctcctcaacccattcaggaactatatatccaagactgcaatgtggacaaggcatctcattgaaccttatctgatatccattgctaaaaatatatggctga |
28027589 |
T |
|
| Q |
118 |
gcagtaacaagaaacacactcttgaaaccaattcctgaaattcaatcataaaagagattctgtcacatatttg---catcatcttcaatttggctact |
212 |
Q |
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||| |||| ||||||||||||||||| || ||||||||||||||| ||||| ||||||||||||| | ||||| |||||||||||||||| |||| |
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|
| T |
28027590 |
gcactaaccagaaacacactcttgaatccgattcctgaaattcaaccataagagagattctgtcaaagatttgtgttatcatcttcaatttggttact |
28027687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 4913583 - 4913439
Alignment:
| Q |
18 |
ctcctcaacccactcaggaactatatagccaatactgcaatgtggacatggcttctcattgaaccttatctgatatccattgctaaaaatataaggttga |
117 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| |||||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
4913583 |
ctcctcaacccattcaggaactatatacccaagactgcattgtggacaaggattctcattgaagcttatctgatatccattgctaaaaatataaggctga |
4913484 |
T |
|
| Q |
118 |
gcagtaacaagaaacacactcttgaaaccaattcctgaaattcaa |
162 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4913483 |
gcagtaaccagaaacacactcttgaaaccaattcctgaaattcaa |
4913439 |
T |
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