View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3320_high_3 (Length: 464)

Name: NF3320_high_3
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3320_high_3
NF3320_high_3
[»] chr5 (3 HSPs)
chr5 (14-448)||(9576249-9576673)
chr5 (300-418)||(42630454-42630572)
chr5 (303-445)||(42638108-42638250)
[»] chr8 (1 HSPs)
chr8 (266-445)||(3368623-3368799)
[»] chr1 (5 HSPs)
chr1 (305-445)||(34287584-34287724)
chr1 (300-395)||(19226212-19226307)
chr1 (303-397)||(361020-361114)
chr1 (350-395)||(19220747-19220792)
chr1 (332-396)||(40399722-40399786)
[»] scaffold0129 (1 HSPs)
scaffold0129 (308-397)||(9590-9679)
[»] chr6 (2 HSPs)
chr6 (305-397)||(287458-287550)
chr6 (311-394)||(21379306-21379389)
[»] chr7 (1 HSPs)
chr7 (350-395)||(25627371-25627416)
[»] chr2 (1 HSPs)
chr2 (305-397)||(16920093-16920185)


Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 14 - 448
Target Start/End: Complemental strand, 9576673 - 9576249
Alignment:
Q  14 aatataataactgtaaccaaaagttaggtctaacgatcgcatggtgccatgggagcggaaaaatcagtttaggtttataaattaaacctaataattttgt 113  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9576673 aatataataactgtaaccaaaagttaggtctaatgatcgcatggtgccatgggagcggaaaaatcagtttaggtttataaattaaacctaataattttgt 9576574  T
Q  114 ttctacaaatccaataatccaattactgcaaaaaagtttttccacagagataacgcttaacaggctttctcaggcttctctcaactcgttccgcttgtct 213  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||    
T  9576573 ttctacaaatccaataatccaattgctgcaaaaaagtttttccacagagataacgcttaacaggctt----------ctctcaactcgttccgcttgtct 9576484  T
Q  214 ttagagtcaagtgtagtgatcaacggatgcagcaaatgaaaaggttagtaataatcacatacatgatgatgttgcctaatttgtcgttttgtcaaaatta 313  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9576483 ttagagtcaagtgtagtgatcaatggatgcagcaaatgaaaaggttagtaataatcacatacatgatgatgttgcctaatttgtcgttttgtcaaaatta 9576384  T
Q  314 cctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtataggaggaatttcttat 413  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9576383 cctttcaaatctttgattcgattttgctgtgtacaaaaattatggactctcttgtttgaaaacccttatttcatgagcatgtttaggaggaatttcttat 9576284  T
Q  414 acaaggatcattcttgttataatgatacatctttc 448  Q
    ||||||||||||||| ||| |||||||||||||||    
T  9576283 acaaggatcattcttattacaatgatacatctttc 9576249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 300 - 418
Target Start/End: Complemental strand, 42630572 - 42630454
Alignment:
Q  300 ttttgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtatag 399  Q
    ||||||||||| | ||||| ||||||||| |||||||| | ||||| |  ||||||||| |||| |||||| ||||  |||||||||||| ||||| | |    
T  42630572 ttttgtcaaaacttcctcttaaatctttgtttcgatttggttgtgtgcgtaaatcatggtctcttttgtttaaaaattcttatttcatgaacatgtttcg 42630473  T
Q  400 gaggaatttcttatacaag 418  Q
     | ||||||||||| ||||    
T  42630472 aaagaatttcttatccaag 42630454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 303 - 445
Target Start/End: Complemental strand, 42638250 - 42638108
Alignment:
Q  303 tgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtataggag 402  Q
    ||||||| || ||||| ||||| |||| ||||||| | ||||| |  ||||| ||| || ||||||| || || |||||||||| || ||||| | | ||    
T  42638250 tgtcaaagttgcctcttaaatccttgactcgatttggttgtgtgcgtaaatcttggtctttcttgttagataatccttatttcaagaccatgtttcgaag 42638151  T
Q  403 gaatttcttatacaaggatcattcttgttataatgatacatct 445  Q
     ||||||||||| ||| ||||||||| ||| ||||||||||||    
T  42638150 aaatttcttatataagaatcattcttattacaatgatacatct 42638108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 266 - 445
Target Start/End: Complemental strand, 3368799 - 3368623
Alignment:
Q  266 aatcacatacatgatgatgttgcctaatttgtcgttttgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctct 365  Q
    ||||||||| ||||||| |||||||   | ||| || |||| ||||||||||||||||||||| |||||||| | ||||| |  ||||||||| ||||||    
T  3368799 aatcacatatatgatgacgttgcct---tcgtcattctgtctaaattacctctcaaatctttgtttcgatttcgttgtgtgcgtaaatcatggtctctct 3368703  T
Q  366 tgtttgaaaacccttatttcatgagcatgtataggaggaatttcttatacaaggatcattcttgttataatgatacatct 445  Q
    | |||||||||||||||||||||  |||||   | || | ||| ||||  ||| ||||||||| ||| ||||||||||||    
T  3368702 tatttgaaaacccttatttcatggacatgttccgaagaatttttttatctaagaatcattcttattacaatgatacatct 3368623  T

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Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 305 - 445
Target Start/End: Original strand, 34287584 - 34287724
Alignment:
Q  305 tcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtataggagga 404  Q
    ||||||||||||||||||||| |  |||||||||| ||  |||  ||||||||| |||  ||||||||||||||||||||||||| ||| | | | || |    
T  34287584 tcaaaattacctctcaaatctatctttcgattttgttgcatacgcaaatcatggtctccattgtttgaaaacccttatttcatgaacatctttcgaagaa 34287683  T
Q  405 atttcttatacaaggatcattcttgttataatgatacatct 445  Q
    ||||||||| ||| |||||||| | ||| || |||||||||    
T  34287684 atttcttatccaatgatcattcatattacaacgatacatct 34287724  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 395
Target Start/End: Complemental strand, 19226307 - 19226212
Alignment:
Q  300 ttttgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgt 395  Q
    ||||||||||| ||||| | |||||| | | |||||||   ||||||   ||||| |||||||| |||||||||||| |||||||||||| |||||    
T  19226307 ttttgtcaaaactacctttgaaatctgtaaatcgatttacttgtgtatgcaaatcgtggactcttttgtttgaaaactcttatttcatgaacatgt 19226212  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 397
Target Start/End: Original strand, 361020 - 361114
Alignment:
Q  303 tgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtat 397  Q
    ||||||| || ||||| |||||||||  ||||||    |||||||| |||||||||  | | || |||||||||||||||||||||| |||||||    
T  361020 tgtcaaagttgcctctaaaatctttgcatcgattcaaatgtgtacacaaatcatgggttatgttatttgaaaacccttatttcatgaacatgtat 361114  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 19220747 - 19220792
Alignment:
Q  350 aaatcatggactctcttgtttgaaaacccttatttcatgagcatgt 395  Q
    ||||| |||||||| |||||||||||| |||||||||||| |||||    
T  19220747 aaatcgtggactcttttgtttgaaaactcttatttcatgaacatgt 19220792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 396
Target Start/End: Complemental strand, 40399786 - 40399722
Alignment:
Q  332 cgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgta 396  Q
    |||||||  ||||| || |||||||||||||| || || ||||||||| ||||||||| ||||||    
T  40399786 cgattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgta 40399722  T

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Target: scaffold0129 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 397
Target Start/End: Original strand, 9590 - 9679
Alignment:
Q  308 aaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtat 397  Q
    ||||| ||||| ||||||||||  |||||| | |||||||| ||||||||| ||| ||| |||||||||||| ||||||||| |||||||    
T  9590 aaattgcctcttaaatctttgaaacgatttagttgtgtacataaatcatggtctcgcttatttgaaaaccctaatttcatgaacatgtat 9679  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 397
Target Start/End: Complemental strand, 287550 - 287458
Alignment:
Q  305 tcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtat 397  Q
    |||||||| ||||| |||||||| |  |||||| | ||||||   |||||||||||||||||||||||||| | | | ||||||| |||||||    
T  287550 tcaaaattgcctctaaaatctttaaaacgatttggatgtgtatgtaaatcatggactctcttgtttgaaaatcttcacttcatgaccatgtat 287458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 394
Target Start/End: Complemental strand, 21379389 - 21379306
Alignment:
Q  311 ttacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatg 394  Q
    |||||||| ||||||||||  |||||| | || || |  ||||||||| ||||||| ||||||||| |||||||||||| ||||    
T  21379389 ttacctcttaaatctttgaagcgatttggatgcgtccgtaaatcatggtctctcttatttgaaaacacttatttcatgaacatg 21379306  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 25627371 - 25627416
Alignment:
Q  350 aaatcatggactctcttgtttgaaaacccttatttcatgagcatgt 395  Q
    ||||||||| ||||||| ||||||||||||| |||||||| |||||    
T  25627371 aaatcatggtctctcttatttgaaaacccttctttcatgaccatgt 25627416  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 397
Target Start/End: Original strand, 16920093 - 16920185
Alignment:
Q  305 tcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtat 397  Q
    |||| ||||||||| ||||||||||  |||||| | || ||||  ||||||||| |  | ||||||||||||| | ||||||||| |||||||    
T  16920093 tcaacattacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgggcctttttgtttgaaaaccttcatttcatgaccatgtat 16920185  T

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