View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3320_high_30 (Length: 242)

Name: NF3320_high_30
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3320_high_30
NF3320_high_30
[»] chr4 (16 HSPs)
chr4 (1-225)||(12119980-12120205)
chr4 (1-225)||(1528042-1528266)
chr4 (21-225)||(6006383-6006588)
chr4 (47-210)||(55908582-55908745)
chr4 (79-154)||(1600533-1600608)
chr4 (72-175)||(53761664-53761764)
chr4 (21-153)||(553535-553667)
chr4 (21-153)||(644886-645018)
chr4 (90-134)||(3438496-3438540)
chr4 (91-154)||(1495832-1495895)
chr4 (91-154)||(1533900-1533963)
chr4 (72-135)||(7225812-7225875)
chr4 (77-164)||(8186991-8187078)
chr4 (72-113)||(371027-371068)
chr4 (81-153)||(1524397-1524469)
chr4 (87-145)||(1552686-1552741)
[»] chr2 (2 HSPs)
chr2 (47-210)||(1037518-1037681)
chr2 (77-211)||(32785628-32785759)
[»] chr6 (10 HSPs)
chr6 (72-145)||(7119264-7119337)
chr6 (72-145)||(7131742-7131815)
chr6 (21-153)||(11936186-11936318)
chr6 (21-153)||(11948166-11948298)
chr6 (15-145)||(6394914-6395044)
chr6 (90-145)||(6426636-6426691)
chr6 (15-145)||(6432211-6432341)
chr6 (91-145)||(14820819-14820873)
chr6 (92-145)||(6402987-6403040)
chr6 (89-145)||(6416090-6416146)
[»] scaffold0295 (1 HSPs)
scaffold0295 (47-193)||(495-641)
[»] chr7 (4 HSPs)
chr7 (89-162)||(7977702-7977775)
chr7 (89-145)||(10614717-10614773)
chr7 (65-145)||(10170049-10170129)
chr7 (65-145)||(10177574-10177654)
[»] chr5 (3 HSPs)
chr5 (92-225)||(41901377-41901510)
chr5 (79-154)||(32267586-32267661)
chr5 (24-225)||(41889393-41889594)
[»] chr1 (1 HSPs)
chr1 (21-145)||(19468418-19468542)
[»] chr3 (3 HSPs)
chr3 (89-144)||(13470652-13470707)
chr3 (15-145)||(51113700-51113830)
chr3 (72-113)||(514679-514720)
[»] scaffold0014 (1 HSPs)
scaffold0014 (92-148)||(88943-88999)
[»] chr8 (2 HSPs)
chr8 (21-153)||(28246206-28246338)
chr8 (123-219)||(32151456-32151552)
[»] scaffold0807 (1 HSPs)
scaffold0807 (89-140)||(1388-1439)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 12120205 - 12119980
Alignment:
Q  1 tgtcacaaattctagtattcgacaagttcaacaccaccagcgtggaaactttaaggttcattataagttgattcagtcttgaacagtgggctaagttcaa 100  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  12120205 tgtcacaaattctagtatgcaacaagttcaacaccaccagggtggaaactttaaggttcattataagttgcttcagtcttgaacagtgggcaaagttcaa 12120106  T
Q  101 atgtctaatcttactacttttccttaaaacttgaccaataccttctttagatattccatagcaagagctcaaatctaagagttgtaaatt-ggggaaaac 199  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||| |||||||||    
T  12120105 atgtctaatcttactacttttctttaaaacttgaccaataccttcgttagatattgcatagaaagagctcaaatataagagttgtaaattgggggaaaac 12120006  T
Q  200 agaagcaaacatattgatgtcttcat 225  Q
    ||||||||||||||||||||||||||    
T  12120005 agaagcaaacatattgatgtcttcat 12119980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 1528266 - 1528042
Alignment:
Q  1 tgtcacaaattctagtattcgacaagttcaacaccaccagcgtggaaactttaaggttcattataagttgattcagtcttgaacagtgggctaagttcaa 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  | |||||||    
T  1528266 tgtcacaaattctagtatgcgacaagttcaacaccaccagcgtggaaactttaaggttcattataagttgcttcagtcttgaacagtggaatcagttcaa 1528167  T
Q  101 atgtctaatcttactacttttccttaaaacttgaccaataccttctttagatattccatagcaagagctcaaatctaagagttgtaaattggggaaaaca 200  Q
    ||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||     
T  1528166 atgcctaatcttactacttttccttaaaacttgaccaattccttctgtagatattccatagaaatagctcaaatctaagagttgtaaattggggaaaacg 1528067  T
Q  201 gaagcaaacatattgatgtcttcat 225  Q
    ||| |||||||||  ||||||||||    
T  1528066 gaaacaaacatatcaatgtcttcat 1528042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 225
Target Start/End: Original strand, 6006383 - 6006588
Alignment:
Q  21 gacaagttcaacaccaccagcgtggaaactttaaggttcattataagttgattcagtcttgaacagtgggct-aagttcaaatgtctaatcttactactt 119  Q
    |||||||| |||| | ||||| |||||||||||| ||  ||| ||||| | |||||||||||||||| || | ||||||||||||||||||||||||| |    
T  6006383 gacaagtttaacatctccagcatggaaactttaaagtctattctaagtagcttcagtcttgaacagttggtttaagttcaaatgtctaatcttactacat 6006482  T
Q  120 ttccttaaaacttgaccaataccttctttagatattccatagcaagagctcaaatctaagagttgtaaattggggaaaacagaagcaaacatattgatgt 219  Q
    ||||||||||||||| ||| |||||| | ||||||    | ||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||    
T  6006483 ttccttaaaacttgagcaacaccttcatcagatatgtactcgcaagagctcaaatccaagagttgtaaattggggcaaactgaagcaaacatattgatgt 6006582  T
Q  220 cttcat 225  Q
    | ||||    
T  6006583 catcat 6006588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 55908745 - 55908582
Alignment:
Q  47 aactttaaggttcattataagttgattcagtcttgaacagtgggctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttct 146  Q
    |||||||| ||| ||| ||||| | |||| ||||||||||| |||||| ||||||||||||| ||||| || | |||||| ||||| || ||||||||||    
T  55908745 aactttaaagtttattctaagtagtttcactcttgaacagtaggctaaattcaaatgtctaaccttacaacatctccttagaacttcacaaataccttct 55908646  T
Q  147 ttagatattccatagcaagagctcaaatctaagagttgtaaattggggaaaacagaagcaaaca 210  Q
    | ||||||   || ||| ||||||||||| |  | ||| |||||||||||||  ||||||||||    
T  55908645 tcagatatgttatggcaggagctcaaatcaagaaattgcaaattggggaaaatggaagcaaaca 55908582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 1600533 - 1600608
Alignment:
Q  79 ttgaacagtgggctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttctttagatat 154  Q
    ||||||| ||||||||||||||||||||||| |||  |  | ||||||||||||||| ||||||||||| ||||||    
T  1600533 ttgaacactgggctaagttcaaatgtctaattttagaaaatctccttaaaacttgacaaataccttcttcagatat 1600608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 53761764 - 53761664
Alignment:
Q  72 ttcagtcttgaacagtgggctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttctttagatattccatagcaagagctca 171  Q
    |||| ||||||||| | ||||||||||||||| ||||| |||| || | ||||||||||||||| |||||   |||||||||||| || |||||| || |    
T  53761764 ttcactcttgaacactcggctaagttcaaatgcctaatgttacaacatctccttaaaacttgacaaatac---ctttagatattcgatcgcaagaactta 53761668  T
Q  172 aatc 175  Q
    ||||    
T  53761667 aatc 53761664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 553535 - 553667
Alignment:
Q  21 gacaagttcaacaccaccagcgtggaaactttaaggttcattataagttgattcagtcttgaacagtgggctaagttcaaatgtctaatcttactacttt 120  Q
    ||||||||||||||| ||||  ||  |||||||| ||||| | || ||   |||| |||||||||| ||| |||||||||||||||||| |||| || |     
T  553535 gacaagttcaacacctccagtttgagaactttaaagttcaatgtacgtaacttcactcttgaacagcgggttaagttcaaatgtctaatgttacaacatg 553634  T
Q  121 tccttaaaacttgaccaataccttctttagata 153  Q
    |||||||||| ||| ||| | |||||| |||||    
T  553635 tccttaaaacatgaacaacagcttcttcagata 553667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 644886 - 645018
Alignment:
Q  21 gacaagttcaacaccaccagcgtggaaactttaaggttcattataagttgattcagtcttgaacagtgggctaagttcaaatgtctaatcttactacttt 120  Q
    |||||||  |||||| ||||  ||| ||||| || ||||| | ||||| | ||||||||||||||| | | ||| |||||||||||||| |||| || |     
T  644886 gacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacata 644985  T
Q  121 tccttaaaacttgaccaataccttctttagata 153  Q
    || ||||||| ||| | |||||||||| |||||    
T  644986 tcattaaaacatgaaccataccttcttcagata 645018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 3438540 - 3438496
Alignment:
Q  90 gctaagttcaaatgtctaatcttactacttttccttaaaacttga 134  Q
    ||||||||||||||||||||||||| || | ||||||||||||||    
T  3438540 gctaagttcaaatgtctaatcttacaacatctccttaaaacttga 3438496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 1495895 - 1495832
Alignment:
Q  91 ctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttctttagatat 154  Q
    |||||| ||||||| | ||||||| || | |||||||||| |||||||||||||||| ||||||    
T  1495895 ctaagtccaaatgtgtcatcttacaacatctccttaaaacatgaccaataccttcttcagatat 1495832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 1533963 - 1533900
Alignment:
Q  91 ctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttctttagatat 154  Q
    |||||||||||||| | ||||||| || | |||||||||| |||| ||||||||||| ||||||    
T  1533963 ctaagttcaaatgtgtcatcttacaacatctccttaaaacatgactaataccttcttcagatat 1533900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 135
Target Start/End: Complemental strand, 7225875 - 7225812
Alignment:
Q  72 ttcagtcttgaacagtgggctaagttcaaatgtctaatcttactacttttccttaaaacttgac 135  Q
    |||| ||||| ||||| || ||||||||||||||||||||||| || | ||| |||||||||||    
T  7225875 ttcactcttggacagtaggataagttcaaatgtctaatcttacaacatctccgtaaaacttgac 7225812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 164
Target Start/End: Complemental strand, 8187078 - 8186991
Alignment:
Q  77 tcttgaacagtgggctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttctttagatattccatagcaa 164  Q
    ||||| ||||| ||||||||||||||  ||||||| || || | || | |||||||||| ||||||||||| ||||||  ||||||||    
T  8187078 tcttggacagtaggctaagttcaaatccctaatctcacaacatctcttcaaaacttgacaaataccttcttcagatatgtcatagcaa 8186991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 371027 - 371068
Alignment:
Q  72 ttcagtcttgaacagtgggctaagttcaaatgtctaatctta 113  Q
    |||| |||||| |||||||||||||||||||| |||||||||    
T  371027 ttcactcttgagcagtgggctaagttcaaatgcctaatctta 371068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 1524469 - 1524397
Alignment:
Q  81 gaacagtgggctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttctttagata 153  Q
    ||||||| ||||||||||||||| ||||  |||| || | |||||||||| |||  ||||||||||| |||||    
T  1524469 gaacagttggctaagttcaaatgcctaagtttacaacatctccttaaaacctgaagaataccttcttcagata 1524397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 1552741 - 1552686
Alignment:
Q  87 tgggctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttc 145  Q
    |||||||||||||||||||||||||||| || |   |||||||||| || |||||||||    
T  1552741 tgggctaagttcaaatgtctaatcttacaacat---cttaaaacttcacaaataccttc 1552686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 1037681 - 1037518
Alignment:
Q  47 aactttaaggttcattataagttgattcagtcttgaacagtgggctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttct 146  Q
    |||||||| ||| ||| ||||| | |||| ||||||| ||| |||||| ||||||||||||| ||||| || | |||||||||||| || ||||||||||    
T  1037681 aactttaaagtttattctaagtagtttcactcttgaatagtaggctaaattcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttct 1037582  T
Q  147 ttagatattccatagcaagagctcaaatctaagagttgtaaattggggaaaacagaagcaaaca 210  Q
    | ||||||   || ||| ||||||||||| |  | ||| |||||||||||||  ||||||||||    
T  1037581 tcagatatgttatggcaggagctcaaatcaagaaattgcaaattggggaaaatggaagcaaaca 1037518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 211
Target Start/End: Complemental strand, 32785759 - 32785628
Alignment:
Q  77 tcttgaacagtgggctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttctttagatattccatagcaagagctcaaatct 176  Q
    ||||||| ||||| | || ||||||||||||||||||  || |   ||||||| ||||| ||||||||||| ||||||   ||||||| ||||||||||     
T  32785759 tcttgaaaagtggtccaaattcaaatgtctaatcttagaacat---cttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatca 32785663  T
Q  177 aagagttgtaaattggggaaaacagaagcaaacat 211  Q
    |  ||||| |||||||  |||| ||||| ||||||    
T  32785662 agtagttgcaaattggaaaaaatagaagaaaacat 32785628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 7119264 - 7119337
Alignment:
Q  72 ttcagtcttgaacagtgggctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttc 145  Q
    |||| |||||||||||||||||||||||||||| ||||||||  || | ||||||||||||||| |||||||||    
T  7119264 ttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttc 7119337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 7131742 - 7131815
Alignment:
Q  72 ttcagtcttgaacagtgggctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttc 145  Q
    |||| |||||||||||||||||||||||||||| ||||||||  || | ||||||||||||||| |||||||||    
T  7131742 ttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttc 7131815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 11936318 - 11936186
Alignment:
Q  21 gacaagttcaacaccaccagcgtggaaactttaaggttcattataagttgattcagtcttgaacagtgggctaagttcaaatgtctaatcttactacttt 120  Q
    ||||||| ||||||| ||||  ||| ||||| || ||||| | || || | ||||||||||||||| | | ||| |||||||||||||| |||| || |     
T  11936318 gacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacata 11936219  T
Q  121 tccttaaaacttgaccaataccttctttagata 153  Q
    || ||||||| ||| |||||||||||| |||||    
T  11936218 tcattaaaacatgaacaataccttcttcagata 11936186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 11948298 - 11948166
Alignment:
Q  21 gacaagttcaacaccaccagcgtggaaactttaaggttcattataagttgattcagtcttgaacagtgggctaagttcaaatgtctaatcttactacttt 120  Q
    ||||||| ||||||| ||||  ||| ||||| || ||||| | || || | ||||||||||||||| | | ||| |||||||||||||| |||| || |     
T  11948298 gacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacata 11948199  T
Q  121 tccttaaaacttgaccaataccttctttagata 153  Q
    || ||||||| ||| |||||||||||| |||||    
T  11948198 tcattaaaacatgaacaataccttcttcagata 11948166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 6394914 - 6395044
Alignment:
Q  15 gtattcgacaagttcaacaccaccagcgtggaaactttaaggttcattataagttgattcagtcttgaacagtgggctaagttcaaatgtctaatcttac 114  Q
    ||||| ||||||||||||||| |||||  || ||||  || |||||||  | || | |||| | ||||||||   ||||||||||||||| ||| |||||    
T  6394914 gtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagcttac 6395013  T
Q  115 tacttttccttaaaacttgaccaataccttc 145  Q
     || |||| |||||||||||| |||||||||    
T  6395014 aacatttctttaaaacttgacaaataccttc 6395044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 6426636 - 6426691
Alignment:
Q  90 gctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttc 145  Q
    ||||||||||||||| ||| ||||| || |||||||||||||| || |||||||||    
T  6426636 gctaagttcaaatgtttaagcttacaacatttccttaaaacttcacaaataccttc 6426691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 6432211 - 6432341
Alignment:
Q  15 gtattcgacaagttcaacaccaccagcgtggaaactttaaggttcattataagttgattcagtcttgaacagtgggctaagttcaaatgtctaatcttac 114  Q
    ||||| |||||||||||||||  |||| ||| ||||| || |||||||  | || | |||| | ||  ||| | |||||||||||||||| |||  ||||    
T  6432211 gtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttatacaataggctaagttcaaatgtttaagtttac 6432310  T
Q  115 tacttttccttaaaacttgaccaataccttc 145  Q
     || | ||||||||||||||| |||||||||    
T  6432311 aacatctccttaaaacttgacaaataccttc 6432341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 14820819 - 14820873
Alignment:
Q  91 ctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttc 145  Q
    |||||||||||||| ||| ||||| || |||||||||| |||||| |||||||||    
T  14820819 ctaagttcaaatgtttaagcttacaacatttccttaaaccttgacaaataccttc 14820873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 6402987 - 6403040
Alignment:
Q  92 taagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttc 145  Q
    |||||||||||| ||||| |||| || | ||||||||||||||| |||||||||    
T  6402987 taagttcaaatgcctaatgttacaacatctccttaaaacttgacaaataccttc 6403040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 6416090 - 6416146
Alignment:
Q  89 ggctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttc 145  Q
    ||||||||||||||| | |||||||| || | || |||||||||||| |||||||||    
T  6416090 ggctaagttcaaatgcccaatcttacaacatatctttaaaacttgacaaataccttc 6416146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 193
Target Start/End: Complemental strand, 641 - 495
Alignment:
Q  47 aactttaaggttcattataagttgattcagtcttgaacagtgggctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttct 146  Q
    |||||||| ||| ||| ||||| | |||| ||||||||||| |||||| ||||||||||||  ||||| || | |||||| ||||| || ||||||||||    
T  641 aactttaaagtttattctaagtagtttcactcttgaacagtaggctaaattcaaatgtctagccttacaacatctccttagaacttcacaaataccttct 542  T
Q  147 ttagatattccatagcaagagctcaaatctaagagttgtaaattggg 193  Q
    | ||||||   || ||| ||||||||||| |  | ||||||||||||    
T  541 tcagatatgttatggcaggagctcaaatcaagaaattgtaaattggg 495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 7977702 - 7977775
Alignment:
Q  89 ggctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttctttagatattccatagc 162  Q
    ||||| ||| ||||||||||| |||| || | ||||||||||||||||||||||||||| ||| || |||||||    
T  7977702 ggctaggtttaaatgtctaatgttacaacatctccttaaaacttgaccaataccttcttcagaaatgccatagc 7977775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 10614717 - 10614773
Alignment:
Q  89 ggctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttc 145  Q
    ||||||||||||||| |||||||||| || | ||||||||||||||| |||||||||    
T  10614717 ggctaagttcaaatgcctaatcttacaacatatccttaaaacttgacaaataccttc 10614773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 145
Target Start/End: Complemental strand, 10170129 - 10170049
Alignment:
Q  65 aagttgattcagtcttgaacagtgggctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttc 145  Q
    |||| |||||| |||||||||||||||||| || ||||| ||||| |||  ||   ||||||||||||||| ||| |||||    
T  10170129 aagtagattcactcttgaacagtgggctaaatttaaatgcctaatattagaacacctccttaaaacttgacaaatgccttc 10170049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 145
Target Start/End: Complemental strand, 10177654 - 10177574
Alignment:
Q  65 aagttgattcagtcttgaacagtgggctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttc 145  Q
    |||| |||||| |||||||||||||||||| || ||||| ||||| |||  ||   ||||||||||||||| ||| |||||    
T  10177654 aagtagattcactcttgaacagtgggctaaatttaaatgcctaatattagaacacctccttaaaacttgacaaatgccttc 10177574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 41901510 - 41901377
Alignment:
Q  92 taagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttctttagatattccatagcaagagctcaaatctaagagttgtaaattg 191  Q
    |||||||||||||||||| |||| ||   |||||||||||||| |||||||||||| | |||| | | | |||  ||||||||| |  || || ||||||    
T  41901510 taagttcaaatgtctaatgttacaacacatccttaaaacttgaacaataccttcttcaaatatgcgacaacaattgctcaaatcaagcagctgcaaattg 41901411  T
Q  192 gggaaaacagaagcaaacatattgatgtcttcat 225  Q
    |||||||  ||||| |||||  ||||||||||||    
T  41901410 gggaaaatggaagcgaacattgtgatgtcttcat 41901377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 32267586 - 32267661
Alignment:
Q  79 ttgaacagtgggctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttctttagatat 154  Q
    ||||||| |||| |||||||||||||||||| |||| || | ||||||||| |||| | |||||||||| ||||||    
T  32267586 ttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaaattgaacgataccttcttcagatat 32267661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 41889594 - 41889393
Alignment:
Q  24 aagttcaacaccaccagcgtggaaactttaaggttcattataagttgattcagtcttgaacagtgggctaagttcaaatgtctaatcttactacttttcc 123  Q
    |||||||||||| |||   ||| |||||||| |||||||  |||| | |||| | |||||||   || ||||||||||| |||||| |||| || | |||    
T  41889594 aagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaacatccggataagttcaaatatctaatgttacaacatatcc 41889495  T
Q  124 ttaaaacttgaccaataccttctttagatattccatagcaagagctcaaatctaagagttgtaaattggggaaaacagaagcaaacatattgatgtcttc 223  Q
    |||||||||||  ||||||||| | | |||| | | | |||  ||||||||| |  || || ||||| |||||||  |||||||||||  ||||||||||    
T  41889494 ttaaaacttgagtaataccttcatcaaatatgcgacaacaattgctcaaatcaagtagctgcaaattagggaaaatggaagcaaacattatgatgtcttc 41889395  T
Q  224 at 225  Q
    ||    
T  41889394 at 41889393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 19468542 - 19468418
Alignment:
Q  21 gacaagttcaacaccaccagcgtggaaactttaaggttcattataagttgattcagtcttgaacagtgggctaagttcaaatgtctaatcttactacttt 120  Q
    ||||| ||||||||| ||||| ||| ||||  || ||||| |  |||| |||||| ||||||||||||||||||||| ||||| ||||| |||  ||       
T  19468542 gacaacttcaacacctccagcttgggaactacaaagttcactccaagtagattcactcttgaacagtgggctaagtttaaatgcctaatattagaacacc 19468443  T
Q  121 tccttaaaacttgaccaataccttc 145  Q
    ||||||||||||||| ||| |||||    
T  19468442 tccttaaaacttgacaaatgccttc 19468418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 13470707 - 13470652
Alignment:
Q  89 ggctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaatacctt 144  Q
    ||||||||||||||| |||||||||| || | ||||||||||||||| ||||||||    
T  13470707 ggctaagttcaaatgcctaatcttacaacatatccttaaaacttgacaaatacctt 13470652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 51113830 - 51113700
Alignment:
Q  15 gtattcgacaagttcaacaccaccagcgtggaaactttaaggttcattataagttgattcagtcttgaacagtgggctaagttcaaatgtctaatcttac 114  Q
    ||||| |||||||  |||||| ||||  ||| | ||| || |||||||  |||| | |||||| |||||||||  ||||| |||||||| ||||| ||||    
T  51113830 gtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttcagttttgaacagtaagctaatttcaaatgcctaattttac 51113731  T
Q  115 tacttttccttaaaacttgaccaataccttc 145  Q
     || | || |||||||||||| |||||||||    
T  51113730 aacatctctttaaaacttgacaaataccttc 51113700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 514720 - 514679
Alignment:
Q  72 ttcagtcttgaacagtgggctaagttcaaatgtctaatctta 113  Q
    |||| |||||| |||||||||||||||||||| |||||||||    
T  514720 ttcactcttgagcagtgggctaagttcaaatgcctaatctta 514679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 88943 - 88999
Alignment:
Q  92 taagttcaaatgtctaatcttactacttttccttaaaacttgaccaataccttcttt 148  Q
    ||||||||||||||||||||||| || | |||||||||  ||| |||||||||||||    
T  88943 taagttcaaatgtctaatcttacaacatctccttaaaatctgatcaataccttcttt 88999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 28246338 - 28246206
Alignment:
Q  21 gacaagttcaacaccaccagcgtggaaactttaaggttcattataagttgattcagtcttgaacagtgggctaagttcaaatgtctaatcttactacttt 120  Q
    ||||||| ||||||| ||||  ||| ||||| || ||||| | || || | ||||||||||||||  | | ||| |||||||||||||| |||| || |     
T  28246338 gacaagtccaacacctccagtttgggaacttcaaagttcaatgtatgtagcttcagtcttgaacaacgagttaaattcaaatgtctaatgttacaacata 28246239  T
Q  121 tccttaaaacttgaccaataccttctttagata 153  Q
    || ||||||| ||| |||||||||||| |||||    
T  28246238 tcattaaaacatgaacaataccttcttcagata 28246206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 219
Target Start/End: Original strand, 32151456 - 32151552
Alignment:
Q  123 cttaaaacttgaccaataccttctttagatattccatagcaagagctcaaatctaagagttgtaaattggggaaaacagaagcaaacatattgatgt 219  Q
    ||||||||||||| ||| ||||||| ||||||   || |||| | |||||||| |  ||||| ||||| |||||||  ||||||||||| |||||||    
T  32151456 cttaaaacttgacaaattccttcttcagatatgttatggcaacacctcaaatcaagcagttgcaaattagggaaaatggaagcaaacattttgatgt 32151552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 1439 - 1388
Alignment:
Q  89 ggctaagttcaaatgtctaatcttactacttttccttaaaacttgaccaata 140  Q
    |||||||||||||||||||||||||  || | ||||||||||||||| ||||    
T  1439 ggctaagttcaaatgtctaatcttataacatctccttaaaacttgacaaata 1388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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