View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3320_high_33 (Length: 239)
Name: NF3320_high_33
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 44839070 - 44838847
Alignment:
| Q |
1 |
aacatgaccctttctttaaaaagaccattttattaatgttatgtgcatcattctaaacttatagttgtaaaacattgttgaaatggtcaaccatctgttg |
100 |
Q |
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| T |
44839070 |
aacatgaccctttctttaaaaagaccattttattaatgttatgtgcatcattctaaacttatagttctaaa-ctttgttgaaatggtcaaccatctgttg |
44838972 |
T |
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| Q |
101 |
attaattattactgttataattttttattaatgtgagttaggagattgtcatattgataaggaggtattagatagttaaaattttcaagaggagtccaca |
200 |
Q |
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| T |
44838971 |
attaattattactgttataattttttattaatgtgagttaggagattgtcatattgataaggaggtattagatagttgaaattttcaagaggagtccaca |
44838872 |
T |
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| Q |
201 |
taagacaataaacaaagagggatat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
44838871 |
taagacaataaacaaagagggatat |
44838847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 44839178 - 44839131
Alignment:
| Q |
80 |
gaaatggtcaaccatctgttgattaattattactgttataatttttta |
127 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||| |||| |
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| T |
44839178 |
gaaatggtcaaccatctgttgattaattattactataataattgttta |
44839131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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