View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3320_high_35 (Length: 237)
Name: NF3320_high_35
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 6 - 221
Target Start/End: Complemental strand, 31860908 - 31860692
Alignment:
| Q |
6 |
atgtcgaagaaaatctcacattgtttagaattaattgtaaagaaaggggagaccaaactatatatgagttatagtttttgcttgcaaaatgtactggttg |
105 |
Q |
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| T |
31860908 |
atgttgaaaaaaatctcacattgtttagaattaattgtaaagaaaggggagaccaaactatatatgagttatagtttttgcttgcaaaatgtactggttg |
31860809 |
T |
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| Q |
106 |
aaaacactcttgcattt-aaccnnnnnnnnnnnnnnccttgtcttatactcttgtcttagaatgttttaagatgtatttaatatttcctttggagggtgt |
204 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31860808 |
aaaacactcttgcatttaaactttttttttttttttccttgtcttatactcttgtcttagaatgttttaagatgtatttaatatttcctttggagggtgt |
31860709 |
T |
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| Q |
205 |
tgatgtactgggggttg |
221 |
Q |
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||||||||||||||||| |
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| T |
31860708 |
tgatgtactgggggttg |
31860692 |
T |
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