View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3320_high_38 (Length: 225)
Name: NF3320_high_38
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 22039609 - 22039805
Alignment:
| Q |
18 |
agtattgacccttaagctaaaaggtataccatatgagaacatagaagaagatcgtttcaacaagagtcctcaacttcttcaatacaatccagtgcacaag |
117 |
Q |
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| T |
22039609 |
agtattgacccttaagctaaaaggtataccatatgagaacatagaggaagatcgtttcaacaagagtcctcaacttcttcaatacaatccagtgcacaag |
22039708 |
T |
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| Q |
118 |
aaaactccagtgttagttcatgatggaaaacctctatgtgagtctatgatcattgttgaatacattgatgagatatggccacaataccctttgcttc |
214 |
Q |
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| T |
22039709 |
aaaactccagtgttggttcatgatggaaaacctctatgtgagtctatgatcattgttgaatacattgatgagatatggccacaataccctttgcttc |
22039805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 34 - 214
Target Start/End: Complemental strand, 40326117 - 40325937
Alignment:
| Q |
34 |
ctaaaaggtataccatatgagaacatagaagaagatcgtttcaacaagagtcctcaacttcttcaatacaatccagtgcacaagaaaactccagtgttag |
133 |
Q |
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| T |
40326117 |
ctaaagggtataccatatgagaacatagaggaagatcgtttcaataaaagtcctctgcttcttcaatataacccaatacacaagaagactccagtgttgg |
40326018 |
T |
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| Q |
134 |
ttcatgatggaaaacctctatgtgagtctatgatcattgttgaatacattgatgagatatggccacaataccctttgcttc |
214 |
Q |
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| T |
40326017 |
ttcatgatggaaaacccatatgcgagtcaatgatcattgttgaatacattgatgagatatggccacaaaacacattgcttc |
40325937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 37 - 200
Target Start/End: Complemental strand, 40338460 - 40338297
Alignment:
| Q |
37 |
aaaggtataccatatgagaacatagaagaagatcgtttcaacaagagtcctcaacttcttcaatacaatccagtgcacaagaaaactccagtgttagttc |
136 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| || || || || | |||||| ||||||||| | ||| |
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| T |
40338460 |
aaaggtataccatatgagaacatagaggaagatcgtttcaataagagctctcaacttcttcactataaccccgtacgcaagaatactccagtgctgattc |
40338361 |
T |
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| Q |
137 |
atgatggaaaacctctatgtgagtctatgatcattgttgaatacattgatgagatatggccaca |
200 |
Q |
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| T |
40338360 |
acgatgaaaaaccaatatgtgagtctatgatcattgttgaatacattgatgagatatggccaca |
40338297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 40 - 200
Target Start/End: Complemental strand, 40343641 - 40343481
Alignment:
| Q |
40 |
ggtataccatatgagaacatagaagaagatcgtttcaacaagagtcctcaacttcttcaatacaatccagtgcacaagaaaactccagtgttagttcatg |
139 |
Q |
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| T |
40343641 |
ggtataccatatgagaacatagaggaatatcgcttcaataaaagtcctctgcttcttcaatataacccaatatacaagaagactccagtgctaattcatg |
40343542 |
T |
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| Q |
140 |
atggaaaacctctatgtgagtctatgatcattgttgaatacattgatgagatatggccaca |
200 |
Q |
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| T |
40343541 |
atggaaaaccaatatgtgagtccatgatcattgttgaatacattgatgagatatggccaca |
40343481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 40331349 - 40331167
Alignment:
| Q |
19 |
gtattgacccttaagctaaaaggtataccatatgagaacatagaagaagatcgtttcaacaagagtcctcaacttcttcaatacaatccagtgcacaaga |
118 |
Q |
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|||| |||||| || || || |||||||| ||||| | ||||||||||||| ||||| | || |||||||||||||||||| || ||| | ||||| | |
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| T |
40331349 |
gtatggaccctaaatctgaagggtataccgtatgatagtatagaagaagatcacttcaataggactcctcaacttcttcaatataacccaatacacaaaa |
40331250 |
T |
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| Q |
119 |
aaactccagtgttagttcatgatggaaaacctctatgtgagtctatgatcattgttgaatacattgatgagatatggccacaa |
201 |
Q |
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| T |
40331249 |
aaactccagtgctggttcatgatggaaaacccatatgtgagtccatgattattgttgaatacattgatgagatatggccacaa |
40331167 |
T |
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