View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3320_high_41 (Length: 212)
Name: NF3320_high_41
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_high_41 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 55003450 - 55003239
Alignment:
| Q |
1 |
ttttttcattggaagaaaatttaggtaagaggcttccgagaacgttctccatctctttagggtatttaccaaatatgattgggtccaaaatcctgtattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55003450 |
ttttttcattggaagaaaatttaggtaagaggcttccaagaacgttctccatctctttagggtatttaccaaatatgattgggtccaaaatcctgtattt |
55003351 |
T |
|
| Q |
101 |
ttatttgagtatatttacactatgaggctctcatctttatacttcgagtgaatcaatagaaaaagctactatattagtatttaaaggagaattataccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55003350 |
ttatttgagtatatttacactatgaggctctcatctttatactttgagtgaatcaatagaaaaagctactatattagtatttaaaggagaattataccaa |
55003251 |
T |
|
| Q |
201 |
ttgaaggtgaat |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
55003250 |
ttgaaggtgaat |
55003239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University