View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3320_high_42 (Length: 208)
Name: NF3320_high_42
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_high_42 |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: scaffold0150 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 18335 - 18515
Alignment:
| Q |
12 |
agatgaagaatatgacgaggacgatgacgatgaagtggaagaagagacagaggagaatgatgaagaagccataggaggagagactttgctttatgtttgc |
111 |
Q |
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| T |
18335 |
agatgaagaatatgacgaggacgatgacgatgaagaggaagaagagacagaggagaatgatgaagaagccataggaggagagactttgctttatgtttgc |
18434 |
T |
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| Q |
112 |
cctaaaaaatgtagttatgatgttacatgtgataaaacaactctttgttctcgttgcaagaaaccgatgaaccgagaaacc |
192 |
Q |
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| T |
18435 |
cctaaaaaatgtagttatgatgttacatgtgataaaacaactctttgttctcgttgcaagaaaccgatgaaccgagaaacc |
18515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 35 - 192
Target Start/End: Complemental strand, 17016724 - 17016567
Alignment:
| Q |
35 |
atgacgatgaagtggaagaagagacagaggagaatgatgaagaagccataggaggagagactttgctttatgtttgccctaaaaaatgtagttatgatgt |
134 |
Q |
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| T |
17016724 |
atgacgatgaagaggaagaagagacagaggaggatgatgaagaaaccataggaggagagactttgctttatgtttgcccgaaaaaatgtagttatgatgt |
17016625 |
T |
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| Q |
135 |
tacatgtgataaaacaactctttgttctcgttgcaagaaaccgatgaaccgagaaacc |
192 |
Q |
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| T |
17016624 |
tacatgtgataaaacaactctttgttctcgttgcaagaaaccgatgaaccgagaaacc |
17016567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 35 - 192
Target Start/End: Complemental strand, 17547161 - 17547004
Alignment:
| Q |
35 |
atgacgatgaagtggaagaagagacagaggagaatgatgaagaagccataggaggagagactttgctttatgtttgccctaaaaaatgtagttatgatgt |
134 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17547161 |
atgacgatgaagaggaagaagagacagaggaggatgatgaagaaaccataggaggagagactttgctttatgtttgcccgaaaaaatgtagttatgatgt |
17547062 |
T |
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| Q |
135 |
tacatgtgataaaacaactctttgttctcgttgcaagaaaccgatgaaccgagaaacc |
192 |
Q |
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| T |
17547061 |
tacatgtgataaaacaactctttgttctcgttgcaagaaaccgatgaaccgagaaacc |
17547004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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