View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3320_low_1 (Length: 508)
Name: NF3320_low_1
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_low_1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 13 - 508
Target Start/End: Original strand, 15281831 - 15282329
Alignment:
| Q |
13 |
aatatcagacatctttgggtacacaacttaattaaatgcttacgcttaattaagggttcatcatacaagtgtttcttgataacctatttctataacaata |
112 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15281831 |
aatatcagacatctttgggtaaacaacttaattaaatgcttacgcttaattaagggttcatcatacaagtgtttcttgataacctatttctataacaata |
15281930 |
T |
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| Q |
113 |
tataaaataaactaaaatcnnnnnnnnnn------gttaaccctttagttcctaagaaaaagggccctagtaatccagagttcgaccaggaggtgagtaa |
206 |
Q |
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||||||||||| |||| | ||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||| |
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| T |
15281931 |
tataaaataaaataaatttctttttttttttttttgttaaccctttagttcctaagaaaa-gggccctggtaatccaaagttcgaccaggaggtgagtaa |
15282029 |
T |
|
| Q |
207 |
agcctagccaagaattgttccaacagaaattgaacttgggtttttctgcacgatttgtcctacggggagctcattaaccacttgagcttaatcacatgat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15282030 |
agcctagccaagaattgttccaacagaaattgaacttgggtttttctgcacgatttgtcctagggggagctcattaaccacttgagcttaatcacatgat |
15282129 |
T |
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| Q |
307 |
ttaaaatcatttttatataaactataagttgtttccccagactatcttgaaattttcaggaaataagtcgaaagcagcttaagaacacgtttttaagtta |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15282130 |
ttaaaatcatttttatataaactataagttgtttccccagactatcttgaaattttcaggaaataagtcgaaagcagcttaagaacacg--tttaagtta |
15282227 |
T |
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| Q |
407 |
tttcataagctcttacaaacagtttcacaagtgtcaatgtcagagtaaacaaggtcaaataagtctattcaaatctatgaagcacagacaccggggacga |
506 |
Q |
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| T |
15282228 |
tttcgtaagctcttacaaacagtttcacaagtgtcaatgtcagagtaaacaaggtcaaataagtctattcaaatctatgaagcacagacaccggagacga |
15282327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 36095586 - 36095509
Alignment:
| Q |
172 |
cctagtaatccagagttcgaccaggaggtgagtaaagcctagccaagaattgtt-ccaacagaaattgaacttgggtt |
248 |
Q |
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|||||||||| ||||||| | |||||| ||||||| || ||||||||||||| ||| ||| ||||||||||||||| |
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| T |
36095586 |
cctagtaatctggagttcggctgggaggtaagtaaagtctggccaagaattgttcccaccaggaattgaacttgggtt |
36095509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 168 - 291
Target Start/End: Original strand, 50414519 - 50414643
Alignment:
| Q |
168 |
gggccctagtaatccagagttcgaccaggaggtgagtaaagcctagccaagaattgttcca-acagaaattgaacttgggtttttctgcacgatttgtcc |
266 |
Q |
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||||||||||||||| |||||| ||||||||| || |||| ||||||||||||||||||| ||| ||||||||| ||||| | ||| || ||| ||| |
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| T |
50414519 |
gggccctagtaatccgtagttcggccaggaggtaagaaaagtctagccaagaattgttccacccaggaattgaactcgggttctcctgaacaattcgtct |
50414618 |
T |
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| Q |
267 |
tacggggagctcattaaccacttga |
291 |
Q |
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| | |||||||||| ||||||||| |
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| T |
50414619 |
ttggtggagctcattgaccacttga |
50414643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 307
Target Start/End: Original strand, 32173048 - 32173083
Alignment:
| Q |
272 |
ggagctcattaaccacttgagcttaatcacatgatt |
307 |
Q |
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| T |
32173048 |
ggagctcattaaccacttgagcttaatcacttgatt |
32173083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 308
Target Start/End: Original strand, 19135616 - 19135644
Alignment:
| Q |
280 |
ttaaccacttgagcttaatcacatgattt |
308 |
Q |
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| T |
19135616 |
ttaaccacttgagcttaatcacatgattt |
19135644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 168 - 292
Target Start/End: Original strand, 32324566 - 32324692
Alignment:
| Q |
168 |
gggccctagtaatccagagttcgaccaggaggtgagtaaagcctagccaagaattgtt-ccaacagaaattgaacttgggttt-ttctgcacgatttgtc |
265 |
Q |
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||||||||||||||| ||||| | || |||||| |||||||||| ||||||||||||| ||| ||| ||| |||| |||||| | | | |||||| ||| |
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| T |
32324566 |
gggccctagtaatccggagtttggccgggaggtaagtaaagcctggccaagaattgttcccaccaggaatcaaactcgggtttctcccgaacgattcgtc |
32324665 |
T |
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| Q |
266 |
ctacggggagctcattaaccacttgag |
292 |
Q |
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| T |
32324666 |
ccaagggaagctcattaaccacttgag |
32324692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 34199115 - 34199175
Alignment:
| Q |
168 |
gggccctagtaatccagagttcgaccaggaggtgagtaaagcctagccaagaattgttcca |
228 |
Q |
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|||||||||| |||||||||||| || |||||| |||||| ||| |||||||||||||||| |
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| T |
34199115 |
gggccctagtgatccagagttcggccgggaggtaagtaaatcctggccaagaattgttcca |
34199175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 449
Target Start/End: Original strand, 27857437 - 27857479
Alignment:
| Q |
407 |
tttcataagctcttacaaacagtttcacaagtgtcaatgtcag |
449 |
Q |
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| T |
27857437 |
tttcataagctctcccaaacagtttcacaagtgtctatgtcag |
27857479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 439
Target Start/End: Original strand, 21247579 - 21247611
Alignment:
| Q |
407 |
tttcataagctcttacaaacagtttcacaagtg |
439 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
21247579 |
tttcataagctcttgcaaacagtttcacaagtg |
21247611 |
T |
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