View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3320_low_14 (Length: 371)

Name: NF3320_low_14
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3320_low_14
NF3320_low_14
[»] chr1 (9 HSPs)
chr1 (14-355)||(47316335-47316677)
chr1 (86-331)||(47319824-47320069)
chr1 (108-228)||(47307046-47307166)
chr1 (160-308)||(47319634-47319782)
chr1 (109-255)||(47316177-47316323)
chr1 (162-255)||(47314438-47314531)
chr1 (24-94)||(47320112-47320182)
chr1 (86-216)||(47311133-47311260)
chr1 (125-191)||(47314699-47314765)


Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 14 - 355
Target Start/End: Complemental strand, 47316677 - 47316335
Alignment:
Q  14 agaacctgtcattttatagatcaaactaggaatttctatacgcacgattgtaatcaaacttattattgttcatcatctttcaactctaatccatcatcac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47316677 agaacctgtcattttatagatcaaactaggaatttctatacgcacgattgtaatcaaacttattattgttcatcatctttcaactctaatccatcatcac 47316578  T
Q  114 cttgttgttc-atcaccatccaatgaaagtgagattttgtgtccctctggcaagaaggtgttgaatcctgaaagtaaatttttatggtctttaaacaact 212  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47316577 cttgttgttctatcaccatccaatgaaagtgagattttgtgtccctctggcaagaaggtgttgaatcctgaaagtaaatttttatggtctttaaacaact 47316478  T
Q  213 ccatcattccttctttgacaactcttacatcaattcttttggcttggtaatcagctaggagtttcaagaattcattgaacttttccatcttatcttcaaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47316477 ccatcattccttctttgacaactcttacatcaattcttttggcttggtaatcagctaggagtttcaagaattcattgaacttttccatcttatcttcaaa 47316378  T
Q  313 tgtaaccttaacttctgttaaaaacgccattgctcgatcttcg 355  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  47316377 tgtaaccttaacttctgttaaaaacgccattgctcgatcttcg 47316335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 86 - 331
Target Start/End: Complemental strand, 47320069 - 47319824
Alignment:
Q  86 tcatctttcaactctaatccatcatcaccttgttgttcatcaccatccaatgaaagtgagattttgtgtccctctggcaagaaggtgttgaatcctgaaa 185  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  | ||||||| |||  |||    
T  47320069 tcatatttcaactctaatccatcatcaccttgttgttcatcaccatccaatggaagtgagattttgtgtccctctggcaaccaagtgttgagtcccaaaa 47319970  T
Q  186 gtaaatttttatggtctttaaacaactccatcattccttctttgacaactcttacatcaattcttttggcttggtaatcagctaggagtttcaagaattc 285  Q
    |||||| |||||||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||||| | ||||||| ||| |||||||||||||||    
T  47319969 gtaaatctttatggtctttaaacaactccatcagtccttctttgaaaactctcatatcaattcttttggcattgtaatcaactacgagtttcaagaattc 47319870  T
Q  286 attgaacttttccatcttatcttcaaatgtaaccttaacttctgtt 331  Q
    ||   ||||||||||||||| |  ||||| ||| |||||| |||||    
T  47319869 atcatacttttccatcttatatggaaatgcaactttaactgctgtt 47319824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 108 - 228
Target Start/End: Complemental strand, 47307166 - 47307046
Alignment:
Q  108 catcaccttgttgttcatcaccatccaatgaaagtgagattttgtgtccctctggcaagaaggtgttgaatcctgaaagtaaatttttatggtctttaaa 207  Q
    |||||||| ||||||||||| ||||||||| |||||||||||  |||||   |||||||||| ||||||||| ||||| ||||  |||||| ||||| ||    
T  47307166 catcacctcgttgttcatcatcatccaatggaagtgagatttcttgtcctggtggcaagaagatgttgaatcttgaaattaaacctttatgatcttttaa 47307067  T
Q  208 caactccatcattccttcttt 228  Q
    ||||||| |||||||||||||    
T  47307066 caactccgtcattccttcttt 47307046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 160 - 308
Target Start/End: Complemental strand, 47319782 - 47319634
Alignment:
Q  160 tggcaagaaggtgttgaatcctgaaagtaaatttttatggtctttaaacaactccatcattccttctttgacaactcttacatcaattcttttggcttgg 259  Q
    |||||||||| ||||||||| ||||| ||||| || ||| ||||| ||||||||||| |||||||||||||  ||||||  |||||||||||||||   |    
T  47319782 tggcaagaagatgttgaatcttgaaattaaatcttgatgttctttcaacaactccataattccttctttgatgactcttctatcaattcttttggccctg 47319683  T
Q  260 taatcagctaggagtttcaagaattcattgaacttttccatcttatctt 308  Q
     |||||  ||||||||||| ||| ||||  ||||||||| |||||||||    
T  47319682 aaatcatgtaggagtttcatgaaatcatcaaacttttccttcttatctt 47319634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 109 - 255
Target Start/End: Complemental strand, 47316323 - 47316177
Alignment:
Q  109 atcaccttgttgttcatcaccatccaatgaaagtgagattttgtgtccctctggcaagaaggtgttgaatcctgaaagtaaatttttatggtctttaaac 208  Q
    ||||| |||||||  |||| ||||||||| |||||||||||  |||||   |||||||||| ||||||||| | ||| ||||| || ||| ||||| |||    
T  47316323 atcacgttgttgtaaatcatcatccaatggaagtgagatttcatgtcctggtggcaagaagatgttgaatcttaaaattaaatcttgatgttctttcaac 47316224  T
Q  209 aactccatcattccttctttgacaactcttacatcaattcttttggc 255  Q
    |||||| | | |||||||||||| ||||||  |||||||||||||||    
T  47316223 aactccgtaactccttctttgacgactcttctatcaattcttttggc 47316177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 255
Target Start/End: Complemental strand, 47314531 - 47314438
Alignment:
Q  162 gcaagaaggtgttgaatcctgaaagtaaatttttatggtctttaaacaactccatcattccttctttgacaactcttacatcaattcttttggc 255  Q
    |||||||| || |||||| ||||| ||||| || ||| ||||||||||||||||| | |||||||||||||||||||  |||||||||||||||    
T  47314531 gcaagaagatgctgaatcttgaaattaaatcttgatgctctttaaacaactccataactccttctttgacaactcttttatcaattcttttggc 47314438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 47320182 - 47320112
Alignment:
Q  24 attttatagatcaaactaggaatttctatacgcacgattgtaatcaaacttattattgttcatcatctttc 94  Q
    |||||| ||||||||||||||||| ||| | ||| ||||||| |||||||| ||||||||| |||||||||    
T  47320182 attttaaagatcaaactaggaattgctacatgcaggattgtagtcaaacttgttattgttcgtcatctttc 47320112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 216
Target Start/End: Complemental strand, 47311260 - 47311133
Alignment:
Q  86 tcatctttcaactctaatccatcatcaccttgttgttcatcaccatccaatgaaagtgagattttgtgtccctctggcaagaaggtgttgaatcctgaaa 185  Q
    |||||||| |||||||||||||||   | || ||||| |||| ||||||||| |||||||||||  |||||   ||||| |||| ||||||||| |||||    
T  47311260 tcatctttgaactctaatccatca---ctttcttgttgatcatcatccaatggaagtgagatttcatgtcctgatggcatgaagatgttgaatcttgaaa 47311164  T
Q  186 gtaaatttttatggtctttaaacaactccat 216  Q
      |||| || ||| |||||||| ||||||||    
T  47311163 tcaaatattgatgttctttaaataactccat 47311133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 47314765 - 47314699
Alignment:
Q  125 tcaccatccaatgaaagtgagattttgtgtccctctggcaagaaggtgttgaatcctgaaagtaaat 191  Q
    |||||| |||||| || ||||||||||||||||  ||||||||| ||||||| |||  |||||||||    
T  47314765 tcaccacccaatggaaatgagattttgtgtcccggtggcaagaaagtgttgagtcccaaaagtaaat 47314699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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