View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3320_low_15 (Length: 360)
Name: NF3320_low_15
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 22 - 349
Target Start/End: Complemental strand, 36387761 - 36387433
Alignment:
| Q |
22 |
ccgtcccatct-ctattctgataccaatcacgtggaaatttgggttcataaccaagtaaacaagaacacttaaagtcatcaaagttaaaagggtcacaat |
120 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36387761 |
ccgtcccatcttctattctgataccaatcacgtggaaatttgggttcataaccaagtaaacaagaacacttaaagtcatcaaagttaaaagggtcacaat |
36387662 |
T |
|
| Q |
121 |
taccatttgatccacatgttccatagttaccacattcgtcagatggttcagaccagcaccggctccattggcccgtttgactgtcccacctgaatgtttg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36387661 |
taccatttgatccacatgttccatagttaccacattcgtcagatggttcagaccagcaccggctccattggcccgtttgactgtcccacctgaatgtttg |
36387562 |
T |
|
| Q |
221 |
aaggaaaccagattgctgaatcactaccctagttatgacagacttagcgaacatgttatatgagaatgctacatagttatcatcatcttccaaaaaagaa |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36387561 |
aaggaaaccagattgctgaatcactaccctagttatgacagacttagcgaacatgttatatgagaatgctacatagttatcatcatcttccaaaaaagaa |
36387462 |
T |
|
| Q |
321 |
acattcaaaatcgccatatctcgtttcat |
349 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
36387461 |
acattcaaaatcgccatatctcgtttcat |
36387433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 26 - 349
Target Start/End: Complemental strand, 36373797 - 36373474
Alignment:
| Q |
26 |
cccatctctattctgataccaatcacgtggaaatttgggttcataaccaagtaaacaagaacacttaaagtcatcaaagttaaaagggtcacaattacca |
125 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||| |||||| |||| ||| ||||| |||||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
36373797 |
cccatctcttctctcataccaatcacgtggaaattttggttcaaaacctggtagacaagtacacttaaagtcctcaaagttcaaagggtcacagttactg |
36373698 |
T |
|
| Q |
126 |
tttgatccacatgttccatagttaccacattcgtcagatggttcagaccagcaccggctccattggcccgtttgactgtcccacctgaatgtttgaagga |
225 |
Q |
| |
|
||||||||||| |||||||||||| |||||| || | ||||||||||||| ||| | ||||||| | ||||| ||| ||| ||||| |||||| || |
|
|
| T |
36373697 |
tttgatccacaggttccatagttatcacattggtttgttggttcagaccagaacctgttccattgacttttttgattgttccaagtgaatatttgaaaga |
36373598 |
T |
|
| Q |
226 |
aaccagattgctgaatcactaccctagttatgacagacttagcgaacatgttatatgagaatgctacatagttatcatcatcttccaaaaaagaaacatt |
325 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36373597 |
aaccagattgctgaacaactatcctagctatgacagacttatcaaacatgttatatgagattgctacatagttatcatcatcttccacaaaagaaacatt |
36373498 |
T |
|
| Q |
326 |
caaaatcgccatatctcgtttcat |
349 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36373497 |
caaaatcgccatatctcgtttcat |
36373474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 26 - 304
Target Start/End: Complemental strand, 36425949 - 36425671
Alignment:
| Q |
26 |
cccatctctattctgataccaatcacgtggaaatttgggttcataaccaagtaaacaagaacacttaaagtcatcaaagttaaaagggtcacaattacca |
125 |
Q |
| |
|
|||||||| | ||| ||||||||| ||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||| |||||||||||||||| | |
|
|
| T |
36425949 |
cccatctcgactctcataccaatctcgtggaaattttggttcgaaaccaagtaaacaagtacacttaaagttctcaaagttcaaagggtcacaattacta |
36425850 |
T |
|
| Q |
126 |
tttgatccacatgttccatagttaccacattcgtcagatggttcagaccagcaccggctccattggcccgtttgactgtcccacctgaatgtttgaagga |
225 |
Q |
| |
|
||||||||||||||||| |||||| |||||| ||| | ||||||||||||| ||||||||||||||| | |||||||||||||| |||||||||||| || |
|
|
| T |
36425849 |
tttgatccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattggctcttttgactgtcccacgtgaatgtttgaaaga |
36425750 |
T |
|
| Q |
226 |
aaccagattgctgaatcactaccctagttatgacagacttagcgaacatgttatatgagaatgctacatagttatcatc |
304 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||||||||| ||||| |
|
|
| T |
36425749 |
aaccagattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgagagtgctacatagttgtcatc |
36425671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 26 - 304
Target Start/End: Complemental strand, 36411783 - 36411505
Alignment:
| Q |
26 |
cccatctctattctgataccaatcacgtggaaatttgggttcataaccaagtaaacaagaacacttaaagtcatcaaagttaaaagggtcacaattacca |
125 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||| |||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||| |
|
|
| T |
36411783 |
cccatctctactctcataccaatcacgtggaaattttggttcaaaaccaagtaaacaagtacacttaaagctctcaaagttcaaagggtcacaattactg |
36411684 |
T |
|
| Q |
126 |
tttgatccacatgttccatagttaccacattcgtcagatggttcagaccagcaccggctccattggcccgtttgactgtcccacctgaatgtttgaagga |
225 |
Q |
| |
|
|||| |||||||||||| |||||| |||||| ||| | ||||||||||||| ||||||||||||| | | ||||||||||||| |||||||||||| || |
|
|
| T |
36411683 |
tttggtccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattgactctcttgactgtcccacatgaatgtttgaaaga |
36411584 |
T |
|
| Q |
226 |
aaccagattgctgaatcactaccctagttatgacagacttagcgaacatgttatatgagaatgctacatagttatcatc |
304 |
Q |
| |
|
||||||||||||||| ||||| ||| || |||||||||||| |||||||||||||||| || ||||||||| ||||| |
|
|
| T |
36411583 |
aaccagattgctgaaccactatccttgtaatgacagacttattaaacatgttatatgagagtgatacatagttgtcatc |
36411505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 26 - 304
Target Start/End: Complemental strand, 36417114 - 36416836
Alignment:
| Q |
26 |
cccatctctattctgataccaatcacgtggaaatttgggttcataaccaagtaaacaagaacacttaaagtcatcaaagttaaaagggtcacaattacca |
125 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||| |||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||| |
|
|
| T |
36417114 |
cccatctctactctcataccaatcacgtggaaattttggttcaaaaccaagtaaacaagtacacttaaagctctcaaagttcaaagggtcacaattactg |
36417015 |
T |
|
| Q |
126 |
tttgatccacatgttccatagttaccacattcgtcagatggttcagaccagcaccggctccattggcccgtttgactgtcccacctgaatgtttgaagga |
225 |
Q |
| |
|
|||| |||||||||||| |||||| |||||| ||| | ||||||||||||| ||||||||||||| | | ||||||||||||| |||||||||||| || |
|
|
| T |
36417014 |
tttggtccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattgactctcttgactgtcccacatgaatgtttgaaaga |
36416915 |
T |
|
| Q |
226 |
aaccagattgctgaatcactaccctagttatgacagacttagcgaacatgttatatgagaatgctacatagttatcatc |
304 |
Q |
| |
|
||||||||||||||| ||||| ||| || |||||||||||| |||||||||||||||| || ||||||||| ||||| |
|
|
| T |
36416914 |
aaccagattgctgaaccactatccttgtaatgacagacttattaaacatgttatatgagagtgatacatagttgtcatc |
36416836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 26 - 349
Target Start/End: Complemental strand, 36369178 - 36368858
Alignment:
| Q |
26 |
cccatctctattctgataccaatcacgtggaaatttggg-ttcataaccaagtaaacaagaacacttaaagtcatcaaagttaaaagggtcacaattacc |
124 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||| | |||| ||||||||||||||| ||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
36369178 |
cccatctctat-ctcataccaatcacgtggaaatttttgcttcaaaaccaagtaaacaagtgcacttaaagtcttcaaagttaaaaaggtcacaattact |
36369080 |
T |
|
| Q |
125 |
atttgatccacatgttccatagttaccacattcgtcagatggttcagaccagcaccggctccattggcccgtttgactgtcccacctgaatgtttgaagg |
224 |
Q |
| |
|
||||||||||| |||||||||||| |||||| ||| | ||||||||||||| ||||| ||||||||| | |||||||||||||| |||||||||||| | |
|
|
| T |
36369079 |
gtttgatccacaggttccatagttatcacattggtctgttggttcagaccagtaccggttccattggctcttttgactgtcccacatgaatgtttgaaag |
36368980 |
T |
|
| Q |
225 |
aaaccagattgctgaatcactaccctagttatgacagacttagcgaacatgttatatgagaatgctacatagttatcatcatcttccaaaaaagaaacat |
324 |
Q |
| |
|
|||||||||||||||| | ||| ||||| |||||||||||| ||||||||||||| | | |||||||||||| |||||||| | |||||||||| |
|
|
| T |
36368979 |
aaaccagattgctgaaccgctattctagtaatgacagacttatcgaacatgttatacgtaagtgctacatagtt---gtcatcttcaaccaaagaaacat |
36368883 |
T |
|
| Q |
325 |
tcaaaatcgccatatctcgtttcat |
349 |
Q |
| |
|
| ||| | | ||||||||||||||| |
|
|
| T |
36368882 |
taaaagtggtcatatctcgtttcat |
36368858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 26 - 349
Target Start/End: Complemental strand, 36404469 - 36404149
Alignment:
| Q |
26 |
cccatctctattctgataccaatcacgtggaaatttgggttcataaccaagtaaacaagaacacttaaagtcatcaaagttaaaagggtcacaattacca |
125 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36404469 |
cccatctctactctcataccaatcacgtggaaattttggttcaaaaccaagtaaacaagtgcacttaaagtcgtcaaagttaaaagggtcacaattactg |
36404370 |
T |
|
| Q |
126 |
tttgatccacatgttccatagttaccacattcgtcagatggttcagaccagcaccggctccattggcccgtttgactgtcccacctgaatgtttgaagga |
225 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| | |||||| || || ||||| ||||||| | ||| | | ||||| ||||| |||||| || |
|
|
| T |
36404369 |
tttgatccacatgttccatagttatcacattggtctgttggttctgaatagaaccggttccattgattcttttcattcccccacgtgaatatttgaaaga |
36404270 |
T |
|
| Q |
226 |
aaccagattgctgaatcactaccctagttatgacagacttagcgaacatgttatatgagaatgctacatagttatcatcatcttccaaaaaagaaacatt |
325 |
Q |
| |
|
|||||||||| | || ||| ||||| |||||||||||| | |||||||||||||||| |||||| |||| |||||||||| ||||||||| || |
|
|
| T |
36404269 |
aaccagattgattaacaactttcctagcgatgacagacttatcaaacatgttatatgagattgctacggagtt---ttcatcttccacaaaagaaacgtt |
36404173 |
T |
|
| Q |
326 |
caaaatcgccatatctcgtttcat |
349 |
Q |
| |
|
||| | |||||||||||||||| |
|
|
| T |
36404172 |
aaaagtttccatatctcgtttcat |
36404149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 26 - 301
Target Start/End: Complemental strand, 36397536 - 36397261
Alignment:
| Q |
26 |
cccatctctattctgataccaatcacgtggaaatttgggttcataaccaagtaaacaagaacacttaaagtcatcaaagttaaaagggtcacaattacca |
125 |
Q |
| |
|
|||||||||| ||| ||||||||| | ||||||||| |||||| ||||||||||||| | |||||||||| |||||||| |||||||||||||||| |
|
|
| T |
36397536 |
cccatctctactctcataccaatcgcttggaaattttggttcaaaaccaagtaaacacgtgcacttaaagttctcaaagttcaaagggtcacaattactg |
36397437 |
T |
|
| Q |
126 |
tttgatccacatgttccatagttaccacattcgtcagatggttcagaccagcaccggctccattggcccgtttgactgtcccacctgaatgtttgaagga |
225 |
Q |
| |
|
||||||||||| |||||||||||| |||||| || | |||||| |||||| ||| | ||||||| | | ||||| ||| ||| ||||| |||||| || |
|
|
| T |
36397436 |
tttgatccacacgttccatagttatcacattggtttgttggttctgaccagaacctgttccattgactcttttgattgttccaagtgaatatttgaatga |
36397337 |
T |
|
| Q |
226 |
aaccagattgctgaatcactaccctagttatgacagacttagcgaacatgttatatgagaatgctacatagttatc |
301 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||||||||||| | ||||||| ||||| | ||||||||||||||| |
|
|
| T |
36397336 |
aaccagattgctgaacaactaacctagctatgacagacttatcaaacatgtcgtatgaaagtgctacatagttatc |
36397261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 26 - 304
Target Start/End: Complemental strand, 36433806 - 36433528
Alignment:
| Q |
26 |
cccatctctattctgataccaatcacgtggaaatttgggttcataaccaagtaaacaagaacacttaaagtcatcaaagttaaaagggtcacaattacca |
125 |
Q |
| |
|
|||||||| | ||| ||||||||| | |||| ||||||||||| ||||| ||||||||| ||| || ||||| ||||||| | |||||||||||||| |
|
|
| T |
36433806 |
cccatctccactctcataccaatcgcctggagatttgggttcaaaaccaggtaaacaagcacatttgaagtccgcaaagttcatagggtcacaattactg |
36433707 |
T |
|
| Q |
126 |
tttgatccacatgttccatagttaccacattcgtcagatggttcagaccagcaccggctccattggcccgtttgactgtcccacctgaatgtttgaagga |
225 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || | ||||| || || || || ||||||| | ||| | |||||||| | ||| |||||| || |
|
|
| T |
36433706 |
tttgatccacatgttccatagttatcacattggtttgttggttgtgaatagaactggttccattgactttttttattgtcccacattaatatttgaaaga |
36433607 |
T |
|
| Q |
226 |
aaccagattgctgaatcactaccctagttatgacagacttagcgaacatgttatatgagaatgctacatagttatcatc |
304 |
Q |
| |
|
||||||||||||||| ||| | |||||| | |||||||||| | | ||||||||| | || |||||||| ||| ||||| |
|
|
| T |
36433606 |
aaccagattgctgaaccaccatcctagtaacgacagacttatcaaccatgttatacgtgagtgctacattgttgtcatc |
36433528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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