View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3320_low_18 (Length: 356)
Name: NF3320_low_18
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 346
Target Start/End: Original strand, 35745283 - 35745628
Alignment:
| Q |
19 |
attatgtcacatacctcgcgcaaggaagcagaactgttacatggagctaagtccatgatatctctgaatgccatgatcttcgtatgaatctctaccatta |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35745283 |
attatgtcacatacctcgcgcaaggaagcagaactgttacatggagctaagtccatgatatctctgaatgccatgatcttcatatgaatctctaccatta |
35745382 |
T |
|
| Q |
119 |
aaatcaattggtctgctcctacgaatgataactccattgactctccattttctttgctctgagcctttg------------------aagacttcttagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35745383 |
aaatcaattggtctgctcctacgaatgataactccattgactctccattttctttgctctgagcctttgaagacttcttaggtgtgcaagacttcttagg |
35745482 |
T |
|
| Q |
201 |
tgtgctagagccttttatcactttcagtccctgcaagtgcttatataatatcaattaatagtgcctaggatatctcagatagataggtaatgctagactt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35745483 |
tgtgctagagccttttatcactttcagtccctgcaagtgcttatataatatcaattaatagtgcctaggatatctcagatagataggtaatgctaagctt |
35745582 |
T |
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| Q |
301 |
ccaacatcttctgcatgtcttgtctttcaatgttattcatctcact |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35745583 |
ccaacatcttctgcatgtcttgtctttcaatgttattcatgtcact |
35745628 |
T |
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