View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3320_low_20 (Length: 322)
Name: NF3320_low_20
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 10678539 - 10678253
Alignment:
| Q |
1 |
tttggaaatatgtcctcaggtgtaaatatggggagagggtgtgtagttgttggaaggtaatggttaaaagtcatcaaagaccgttgatatctctaggaaa |
100 |
Q |
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| T |
10678539 |
tttggaaatatgtcctcaagtgtaaatatggggagagggtgtgtggttgttggaaggtaatggttaaaagtcatcaaagaccgttgatatctcaaggaaa |
10678440 |
T |
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| Q |
101 |
ctccttttagatcaatcatatctcaacaaagattaatttctcaaggagaaatgtcttaacaccgggtgcttcttagaattgtgctttttgtggtggtggt |
200 |
Q |
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| T |
10678439 |
ctccttctagatca----tatcccaacaaagattaatttctcaaggagaaatgtcttaacaccgggtgcttcttagaattgtgctttttgtggtggtggt |
10678344 |
T |
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| Q |
201 |
gaggaaagttcttctcacatcttcttgcattgtgatgtggtgtttaaggtttggctaaaggtgttcaggcggcttaatttgtaattacaac |
291 |
Q |
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| T |
10678343 |
gaggaaagttcttctcacatcttcttgcattgtgatgtggtgtttaaggtttggctaaaggtgttcaggcggcttaatttgtaattacaac |
10678253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 43892398 - 43892435
Alignment:
| Q |
161 |
accgggtgcttcttagaattgtgctttttgtggtggtg |
198 |
Q |
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| T |
43892398 |
accgggtgcctctttgaattgtgctttttgtggtggtg |
43892435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 25663952 - 25664052
Alignment:
| Q |
126 |
acaaagattaatttctcaaggagaaatgtcttaacaccgggtgcttcttagaattgtgcttttt---gtggtggtggtgaggaaagttcttctcacatct |
222 |
Q |
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| T |
25663952 |
acaaagactaatttgacaaggagaaatgtctta---ccgcatgcttctttgaattgtgctttttgtggtggtggtggtgaggaaagttcttctcatgtct |
25664048 |
T |
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| Q |
223 |
tctt |
226 |
Q |
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|||| |
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| T |
25664049 |
tctt |
25664052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 280
Target Start/End: Original strand, 47209992 - 47210086
Alignment:
| Q |
186 |
ttttgtggtggtggtgaggaaagttcttctcacatcttcttgcattgtgatgtggtgtttaaggtttggctaaaggtgttcaggcggcttaattt |
280 |
Q |
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| T |
47209992 |
ttttgtgcaggtggtgaggaaacttctgctcatattttcttgcattgtgaggtggtgatgaaggagtgggaaaaggtgttcatgtggctcaattt |
47210086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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