View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3320_low_21 (Length: 321)
Name: NF3320_low_21
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 27559821 - 27560130
Alignment:
| Q |
18 |
caataataacattaactagactaaactctgccactactgaacaacctctgataagcatacctttttctgatgatcctccaggccatacattcccagaaca |
117 |
Q |
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| T |
27559821 |
caataataacattaactagactaaactctgccactactgaacaacctctgataagcatacctttttctgatgatcctccaggccatacatttccagaaca |
27559920 |
T |
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| Q |
118 |
aattccaactcctgattctcctcctgtaacttttcaatctgtaacaaaacaccttaatgagttgtttgaaattatagacaatcttgaaggcctctaaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27559921 |
aattccaactcctgattctcctcctgtaacttttcaatctgtaacaaaacaccttaatgagttgtttgaaattatagacaatcttgaaggcctctaaaat |
27560020 |
T |
|
| Q |
218 |
cacaatgcagataatgtttgagaaatatggaaagtataggagcagatacacatg----------caaaacaaaggaaaagaaaaacattgcaatcaaatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27560021 |
cacaatgcagataatgtttgagaaatatggaaagtataggagcagatacacatgcaaaacacaacaaaacaaaggaaaagaaaaacattgcaatcaaatt |
27560120 |
T |
|
| Q |
308 |
catttcagtc |
317 |
Q |
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| |||||||| |
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| T |
27560121 |
cgtttcagtc |
27560130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 36667385 - 36667645
Alignment:
| Q |
18 |
caataataacattaactagactaaactctgccactactgaacaacctctgataagcatacctttttctgatgatcctccaggccatacattcccagaaca |
117 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| ||||| ||||||||| |||||||| ||| |||| |
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| T |
36667385 |
caataattacattaactagactaaactctgccactactgaacaacttcagatcagcatacctttt-ctgataatcctccagaccatacatatccaaaaca |
36667483 |
T |
|
| Q |
118 |
aattccaactcctgattctcctcctgtaacttttcaatctgtaacaaaacaccttaatgagttgtttgaaattatagacaatcttgaaggcctctaaaat |
217 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
36667484 |
aattctaactcctggttctcctcctgtaacttttcaatctgtaacaaaacaccttaatgagttgtttgaaattagagacaatctt-aaggcctctaaaat |
36667582 |
T |
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| Q |
218 |
cacaatgcagataatgtttgagaaatatggaaagtataggagcagatacacatgcaaaacaaa |
280 |
Q |
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|| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
36667583 |
cagaatgcagataatgtttgagaatcatggaaagtatagttgcagatacacatgcaaaacaaa |
36667645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 26 - 304
Target Start/End: Original strand, 29409229 - 29409518
Alignment:
| Q |
26 |
acattaactagactaaactctgccactactgaacaacctctgataagcatacctttttctgatgatcctccaggccatacattcccagaacaaattccaa |
125 |
Q |
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|||||||||||||||| ||||||||||||||||||||| | ||| |||||||||||| ||||| ||| || ||||||||||| ||| ||||||||| || |
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| T |
29409229 |
acattaactagactaagctctgccactactgaacaaccccagatcagcatacctttt-ctgataatcttctaggccatacatatccaaaacaaattctaa |
29409327 |
T |
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| Q |
126 |
ctcctgattctcctcctgtaacttttcaatctgtaacaaaacaccttaatgagttgtttgaaa-----ttatagacaatcttgaaggcctctaaaatcac |
220 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| ||||||||| |
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| T |
29409328 |
ctcccgattctcctcctgtaacttttcaatctgtaacaaaacatcttaatgagttggttgaaaattagttatagacaatcttgaaggccactaaaatcat |
29409427 |
T |
|
| Q |
221 |
aatgcagataatgtttgagaaatatggaaagtataggagcagatacacatg-------caaaacaaaggaaaagaaaaacattgcaatcaa |
304 |
Q |
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|||||| |||||||||||||| ||||||| |||||| ||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
29409428 |
aatgcatataatgtttgagaatcatggaaaatataggtgcagatacacaagcaaaacacaaaacaaaggaaaagaaaaacattgcaatcaa |
29409518 |
T |
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