View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3320_low_22 (Length: 314)
Name: NF3320_low_22
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 29502860 - 29503149
Alignment:
| Q |
10 |
aagaatatgattagaagaaagttagtaaaaagatagcttgagagttgagaactaaaaggacattccttatgctcccttatctttcgggtaaaatactgtt |
109 |
Q |
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| T |
29502860 |
aagaataagattagaagaaagttagtaaaaagatagcttgagagttgagaactaaaaggacattccttatgctcccttatctttcgggtaaaatactgtt |
29502959 |
T |
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| Q |
110 |
tctagcctctagatggagactttttctccaaacaaagaaaccaaaacaacaaactttctctttctcaccccaaaattcagccaaacaaatttttctctgt |
209 |
Q |
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| T |
29502960 |
tctagcctctagatggagactttttctccaaacaaagaaaccaaaacaacaaactttctctttctcaccccaaaattcagccaaacaaatttttctctgt |
29503059 |
T |
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| Q |
210 |
nnnnnnnccaataccatcgccattgcaagttaatcaaatttcatcatattcactcatagaacctaacatcaccataatgagagttacaac |
299 |
Q |
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| T |
29503060 |
aaaaaaaccaataccatcgccattgcaagttaatcaaatttcatcatattcactcatagaacctaacatcaccataatgagagttacaac |
29503149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 217 - 299
Target Start/End: Original strand, 29492676 - 29492758
Alignment:
| Q |
217 |
ccaataccatcgccattgcaagttaatcaaatttcatcatattcactcatagaacctaacatcaccataatgagagttacaac |
299 |
Q |
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| T |
29492676 |
ccaacaccatcaccattgcagattaatcaaatttcattatattcactcattgaacctaacatcaccataatgagagttacaac |
29492758 |
T |
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