View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3320_low_24 (Length: 282)

Name: NF3320_low_24
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3320_low_24
NF3320_low_24
[»] chr5 (4 HSPs)
chr5 (14-122)||(13879567-13879675)
chr5 (14-112)||(13875350-13875448)
chr5 (203-263)||(24242313-24242373)
chr5 (203-261)||(27490411-27490466)
[»] chr8 (2 HSPs)
chr8 (203-263)||(26521105-26521165)
chr8 (203-263)||(34314257-34314317)
[»] chr1 (1 HSPs)
chr1 (203-261)||(35713330-35713388)
[»] chr3 (3 HSPs)
chr3 (203-263)||(34826465-34826525)
chr3 (203-252)||(48166442-48166490)
chr3 (203-238)||(46652072-46652107)
[»] chr2 (2 HSPs)
chr2 (203-263)||(29042685-29042745)
chr2 (203-263)||(45412623-45412683)
[»] chr7 (2 HSPs)
chr7 (203-271)||(7848352-7848418)
chr7 (203-257)||(47577761-47577815)


Alignment Details
Target: chr5 (Bit Score: 109; Significance: 7e-55; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 13879567 - 13879675
Alignment:
Q  14 cacagacatcaatctcttccttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13879567 cacagacatcaatctcttccttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatc 13879666  T
Q  114 atcatcatc 122  Q
    |||||||||    
T  13879667 atcatcatc 13879675  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 13875350 - 13875448
Alignment:
Q  14 cacagacatcaatctcttccttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagat 112  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||| |||| ||||||| ||||||||| ||||||  |||||| |||||||||||||    
T  13875350 cacagacatcaatctcttccttcctcacgttgttggcgaccagattcaaccgaaaaatcaaagactcctcggtctcctcaaaatcacagagaacaagat 13875448  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 24242373 - 24242313
Alignment:
Q  203 gaaggggatggattggaacaaccaggaaagaagagaagaagagattgttgtgttgttgttg 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24242373 gaaggggatggattggaacaaccaggaaagaagagaagaagagattgttgtgttgatgttg 24242313  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 27490466 - 27490411
Alignment:
Q  203 gaaggggatggattggaacaaccaggaaagaagagaagaagagattgttgtgttgttgt 261  Q
    |||||||||||||||||||||||| ||||||||||   |||||||||||||||| ||||    
T  27490466 gaaggggatggattggaacaaccatgaaagaagag---aagagattgttgtgttcttgt 27490411  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 26521165 - 26521105
Alignment:
Q  203 gaaggggatggattggaacaaccaggaaagaagagaagaagagattgttgtgttgttgttg 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26521165 gaaggggatggattggaacaaccaggaaagaagagaagaagagattgttgtgttgttgttg 26521105  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 34314317 - 34314257
Alignment:
Q  203 gaaggggatggattggaacaaccaggaaagaagagaagaagagattgttgtgttgttgttg 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34314317 gaaggggatggattggaacaaccaggaaagaagagaagaagagattgttgtgttgatgttg 34314257  T

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Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 35713330 - 35713388
Alignment:
Q  203 gaaggggatggattggaacaaccaggaaagaagagaagaagagattgttgtgttgttgt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35713330 gaaggggatggattggaacaaccaggaaagaagagaagaagagattgttgtgttgttgt 35713388  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 263
Target Start/End: Original strand, 34826465 - 34826525
Alignment:
Q  203 gaaggggatggattggaacaaccaggaaagaagagaagaagagattgttgtgttgttgttg 263  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34826465 gaaggggatggattggaacaaccagaaaagaagagaagaagagattgttgtgttgttgttg 34826525  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 48166442 - 48166490
Alignment:
Q  203 gaaggggatggattggaacaaccaggaaagaagagaagaagagattgttg 252  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  48166442 gaagaggatggattggaacaaccaggaaagaagag-agaagagattgttg 48166490  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 46652107 - 46652072
Alignment:
Q  203 gaaggggatggattggaacaaccaggaaagaagaga 238  Q
    |||||||||||||||||||||| |||||||||||||    
T  46652107 gaaggggatggattggaacaactaggaaagaagaga 46652072  T

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Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 29042745 - 29042685
Alignment:
Q  203 gaaggggatggattggaacaaccaggaaagaagagaagaagagattgttgtgttgttgttg 263  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29042745 gaaggggatggattggaacaatcaggaaagaagagaagaagagattgttgtgttgttgttg 29042685  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 45412683 - 45412623
Alignment:
Q  203 gaaggggatggattggaacaaccaggaaagaagagaagaagagattgttgtgttgttgttg 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45412683 gaaggggatggattggaacaaccaggaaagaagagaagaagagattgttgtgttgatgttg 45412623  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 7848418 - 7848352
Alignment:
Q  203 gaaggggatggattggaacaaccaggaaagaagagaagaagagattgttgtgttgttgttgatttgatg 271  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  7848418 gaaggagatggattggaacaaccaggaaagaagagaagaagagattgt--tgttgttgttgatttgatg 7848352  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 47577815 - 47577761
Alignment:
Q  203 gaaggggatggattggaacaaccaggaaagaagagaagaagagattgttgtgttg 257  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  47577815 gaaggggatgaattggaacaaccatgaaagaagagaagaagagattgttgtgttg 47577761  T

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