View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3320_low_25 (Length: 281)

Name: NF3320_low_25
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3320_low_25
NF3320_low_25
[»] chr2 (6 HSPs)
chr2 (20-103)||(17375293-17375376)
chr2 (26-99)||(1895430-1895503)
chr2 (20-96)||(1551621-1551697)
chr2 (20-99)||(17281967-17282047)
chr2 (20-97)||(3921614-3921691)
chr2 (57-99)||(34660306-34660348)
[»] chr8 (2 HSPs)
chr8 (20-99)||(10408845-10408924)
chr8 (20-99)||(5994650-5994729)
[»] chr6 (4 HSPs)
chr6 (20-99)||(21881487-21881566)
chr6 (20-99)||(20740598-20740677)
chr6 (228-269)||(20740453-20740494)
chr6 (43-96)||(30845580-30845633)
[»] chr5 (7 HSPs)
chr5 (20-99)||(7767028-7767107)
chr5 (20-99)||(18696953-18697032)
chr5 (20-99)||(41355546-41355625)
chr5 (21-99)||(27170113-27170191)
chr5 (57-101)||(6030391-6030435)
chr5 (61-99)||(7271854-7271892)
chr5 (223-267)||(38958398-38958442)
[»] chr1 (8 HSPs)
chr1 (20-99)||(34654998-34655077)
chr1 (20-99)||(34117992-34118071)
chr1 (20-99)||(39709021-39709100)
chr1 (20-99)||(26236675-26236754)
chr1 (20-99)||(11408008-11408087)
chr1 (57-101)||(615779-615823)
chr1 (43-96)||(11814836-11814889)
chr1 (223-267)||(34654830-34654874)
[»] chr7 (3 HSPs)
chr7 (25-103)||(3302591-3302669)
chr7 (228-267)||(3302427-3302466)
chr7 (223-267)||(11698569-11698613)
[»] chr4 (7 HSPs)
chr4 (20-99)||(47518474-47518553)
chr4 (22-95)||(23054258-23054331)
chr4 (20-100)||(53202285-53202365)
chr4 (36-99)||(6410011-6410074)
chr4 (36-99)||(34227057-34227120)
chr4 (50-99)||(12469335-12469384)
chr4 (223-267)||(53202118-53202162)
[»] chr3 (3 HSPs)
chr3 (47-102)||(43275996-43276051)
chr3 (57-99)||(18269766-18269808)
chr3 (228-272)||(18269927-18269971)


Alignment Details
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 17375376 - 17375293
Alignment:
Q  20 gatggatcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatgacag 103  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  17375376 gatggatcatatctaggttcgcttatgaactgttatggtttcgatgaatctttggttgtgttggtttgtggtgcttcatgacag 17375293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 1895503 - 1895430
Alignment:
Q  26 tcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatg 99  Q
    |||||||||||||||||||||||||  ||| ||||||||| ||||||||||||||| ||||||||| |||||||    
T  1895503 tcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttggtttgtggtacttcatg 1895430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 1551621 - 1551697
Alignment:
Q  20 gatggatcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttc 96  Q
    |||||||||| | ||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||||||| ||||    
T  1551621 gatggatcatgtataggttcgcttatgaacttatatagtttcgatggatctttggttgtgttggtttgtggtacttc 1551697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 17281967 - 17282047
Alignment:
Q  20 gatggatcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttag-tttgtggtgcttcatg 99  Q
    ||||||||||||||||||| |||||||||||  ||| ||||||||| ||||||||||||||| | |||||||| |||||||    
T  17281967 gatggatcatatctaggtttgcttatgaacttatatggtttcgatggatctttggttgtgttggttttgtggtacttcatg 17282047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 3921691 - 3921614
Alignment:
Q  20 gatggatcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttca 97  Q
    ||||||||||||||| |||||||||||||||  ||| |||| |||| || |||||||||||| ||||||||| |||||    
T  3921691 gatggatcatatctaagttcgcttatgaacttatatggttttgatggatgtttggttgtgttggtttgtggtacttca 3921614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 34660348 - 34660306
Alignment:
Q  57 gtttcgatgaatctttggttgtgttagtttgtggtgcttcatg 99  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  34660348 gtttcgatggatctttggttgtgttggtttgtggtgcttcatg 34660306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 10408924 - 10408845
Alignment:
Q  20 gatggatcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatg 99  Q
    ||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  10408924 gatggatcatatctaggttcgcttatgatatgttatggtttcgatgaatctttggttgtgttggtttgtggtgcttcatg 10408845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 5994729 - 5994650
Alignment:
Q  20 gatggatcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatg 99  Q
    |||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||||||||| |||||||||||||||||    
T  5994729 gatggatcatatctgggttcgcttatgaactgttatggttttgatggatctttggttgtgttggtttgtggtgcttcatg 5994650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 21881566 - 21881487
Alignment:
Q  20 gatggatcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatg 99  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||| |||||||||||||||||    
T  21881566 gatggatcatatctaggttcgcttatgaactgctatggtttcgatgaatctttggttatgttggtttgtggtgcttcatg 21881487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 20740677 - 20740598
Alignment:
Q  20 gatggatcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatg 99  Q
    ||||||||||||||||||||| |||||||||  ||| ||||||||| ||||||||||||||| |||| |||| |||||||    
T  20740677 gatggatcatatctaggttcggttatgaacttatatggtttcgatggatctttggttgtgttggtttatggtacttcatg 20740598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 20740494 - 20740453
Alignment:
Q  228 taatggtggtttttgtggtggtcaattttagttttggtgatg 269  Q
    |||||||| |||||||||||||||||  ||||||||||||||    
T  20740494 taatggtgatttttgtggtggtcaatggtagttttggtgatg 20740453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 30845633 - 30845580
Alignment:
Q  43 tatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttc 96  Q
    ||||| ||||||| |||| ||||||| |||||||||||| |||| |||||||||    
T  30845633 tatgatctgttatggttttgatgaatttttggttgtgttggtttatggtgcttc 30845580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 7767028 - 7767107
Alignment:
Q  20 gatggatcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatg 99  Q
    |||||||||||||||||||| |||||||| |||||| ||||||||| ||||||||||||||| |||||||||||||||||    
T  7767028 gatggatcatatctaggttcacttatgaattgttatggtttcgatggatctttggttgtgttggtttgtggtgcttcatg 7767107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 18697032 - 18696953
Alignment:
Q  20 gatggatcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatg 99  Q
    |||||||||||||||||||||||||||||||||||| | |||| || ||||||||||||||| |||||||||||||||||    
T  18697032 gatggatcatatctaggttcgcttatgaactgttatgggttcggtggatctttggttgtgttggtttgtggtgcttcatg 18696953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 41355546 - 41355625
Alignment:
Q  20 gatggatcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatg 99  Q
    ||||||||||||||| ||||||| |||||||  ||| ||||||||| ||||||||||||||| ||||||||| |||||||    
T  41355546 gatggatcatatctatgttcgctcatgaacttatatggtttcgatggatctttggttgtgttggtttgtggtacttcatg 41355625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 27170113 - 27170191
Alignment:
Q  21 atggatcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatg 99  Q
    ||||||||||| | | ||  |||| |||||||||| ||||||||| ||||||||||||||| |||||||||||||||||    
T  27170113 atggatcatatttggctttacttacgaactgttatggtttcgatggatctttggttgtgttggtttgtggtgcttcatg 27170191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 6030391 - 6030435
Alignment:
Q  57 gtttcgatgaatctttggttgtgttagtttgtggtgcttcatgac 101  Q
    ||||||||| ||||||||||||||| |||||||||||||| ||||    
T  6030391 gtttcgatggatctttggttgtgttggtttgtggtgcttcctgac 6030435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 7271892 - 7271854
Alignment:
Q  61 cgatgaatctttggttgtgttagtttgtggtgcttcatg 99  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  7271892 cgatggatctttggttgtgttggtttgtggtgcttcatg 7271854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 38958398 - 38958442
Alignment:
Q  223 aggggtaatggtggtttttgtggtggtcaattttagttttggtga 267  Q
    |||| |||||||| |||||||||||||||||  ||||||||||||    
T  38958398 agggttaatggtgatttttgtggtggtcaatggtagttttggtga 38958442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 34655077 - 34654998
Alignment:
Q  20 gatggatcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatg 99  Q
    ||||||||||||||||||||||||||||| |||||| |||| |||| ||||||| ||||||| |||||||||||||||||    
T  34655077 gatggatcatatctaggttcgcttatgaaatgttatggttttgatgcatctttgattgtgttggtttgtggtgcttcatg 34654998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 34118071 - 34117992
Alignment:
Q  20 gatggatcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatg 99  Q
    |||||||||||||||||||||||||||||||||||| |||||  || |||||||||||||||  |||||||||| |||||    
T  34118071 gatggatcatatctaggttcgcttatgaactgttatggtttcagtggatctttggttgtgttgatttgtggtgcctcatg 34117992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 39709021 - 39709100
Alignment:
Q  20 gatggatcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatg 99  Q
    |||||||| ||||| |||||||||| |||||||||| |||| |||| ||||||||||||||| |||||||||||||||||    
T  39709021 gatggatcgtatctgggttcgcttaggaactgttatggttttgatggatctttggttgtgttggtttgtggtgcttcatg 39709100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 26236675 - 26236754
Alignment:
Q  20 gatggatcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatg 99  Q
    ||||||||| |||| ||||| ||||||| ||||||| | ||||||| ||||||||||| ||| |||||||||||||||||    
T  26236675 gatggatcagatctgggttcacttatgacctgttatgggttcgatggatctttggttgcgttggtttgtggtgcttcatg 26236754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 11408008 - 11408087
Alignment:
Q  20 gatggatcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatg 99  Q
    ||||||||| || | |||| ||||||||  |||||| |||||||  |||||||||||||||| |||||||||||||||||    
T  11408008 gatggatcagatatgggttagcttatgatatgttatggtttcgacaaatctttggttgtgttggtttgtggtgcttcatg 11408087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 615823 - 615779
Alignment:
Q  57 gtttcgatgaatctttggttgtgttagtttgtggtgcttcatgac 101  Q
    |||| |||| |||||||||||||||||||||||||||||||||||    
T  615823 gttttgatggatctttggttgtgttagtttgtggtgcttcatgac 615779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 11814889 - 11814836
Alignment:
Q  43 tatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttc 96  Q
    ||||| ||||||| |||| ||||||  |||||||||||| ||||||||||||||    
T  11814889 tatgatctgttatggttttgatgaaattttggttgtgtttgtttgtggtgcttc 11814836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 34654874 - 34654830
Alignment:
Q  223 aggggtaatggtggtttttgtggtggtcaattttagttttggtga 267  Q
    |||| |||||||| |||||||||||||||||  ||||||||||||    
T  34654874 agggttaatggtgatttttgtggtggtcaatggtagttttggtga 34654830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 3302669 - 3302591
Alignment:
Q  25 atcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatgacag 103  Q
    ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||| || || ||||||||||||||||||    
T  3302669 atcatatctagattcgcttattaactgttatagtttcgatggatctttggttgtattggtatgtggtgcttcatgacag 3302591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 267
Target Start/End: Complemental strand, 3302466 - 3302427
Alignment:
Q  228 taatggtggtttttgtggtggtcaattttagttttggtga 267  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  3302466 taatggtggtttttgtggtggtcaatggtagttttggtga 3302427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 11698569 - 11698613
Alignment:
Q  223 aggggtaatggtggtttttgtggtggtcaattttagttttggtga 267  Q
    |||| |||||||| |||||||||||||||||  ||||||||||||    
T  11698569 agggttaatggtgatttttgtggtggtcaatggtagttttggtga 11698613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 47518474 - 47518553
Alignment:
Q  20 gatggatcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatg 99  Q
    |||| ||||||||||||||||||||||||||  ||| ||||||||| ||||||||||||||| ||||||||| |||||||    
T  47518474 gatgaatcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttcgtttgtggtacttcatg 47518553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 23054258 - 23054331
Alignment:
Q  22 tggatcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgctt 95  Q
    |||||||||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||| ||| |||||||||    
T  23054258 tggatcatatctcggttcgcttatgaactgttatggtttcaatggatctttggttgtgttggttcgtggtgctt 23054331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 53202365 - 53202285
Alignment:
Q  20 gatggatcatatctaggttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatga 100  Q
    |||| ||||||||||| ||||||||||||||  ||| ||||||||| |||||||||||| || ||||||||| ||||||||    
T  53202365 gatgaatcatatctagattcgcttatgaacttatatggtttcgatggatctttggttgtattggtttgtggtacttcatga 53202285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 6410074 - 6410011
Alignment:
Q  36 gttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatg 99  Q
    |||||||||||| || |||| ||||||||||||||| ||||||||| |||||||||||||||||    
T  6410074 gttcgcttatgatctattatggtttcgatgaatcttgggttgtgttggtttgtggtgcttcatg 6410011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 34227057 - 34227120
Alignment:
Q  36 gttcgcttatgaactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatg 99  Q
    |||||||||||||||  ||| ||||| ||| ||||||||||||||| || |||||| |||||||    
T  34227057 gttcgcttatgaacttatatggtttcaatggatctttggttgtgttggtctgtggtacttcatg 34227120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 12469335 - 12469384
Alignment:
Q  50 tgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatg 99  Q
    |||| ||||||||||| ||| ||||||||||| ||||||||| |||||||    
T  12469335 tgttctagtttcgatggatccttggttgtgttggtttgtggtccttcatg 12469384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 53202162 - 53202118
Alignment:
Q  223 aggggtaatggtggtttttgtggtggtcaattttagttttggtga 267  Q
    |||| |||||||| |||||||||||||||||  ||||||||||||    
T  53202162 agggttaatggtgatttttgtggtggtcaatggtagttttggtga 53202118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 43276051 - 43275996
Alignment:
Q  47 aactgttatagtttcgatgaatctttggttgtgttagtttgtggtgcttcatgaca 102  Q
    |||||||||  |||||||||||||||||||||||| ||||||||||||||||||||    
T  43276051 aactgttatgatttcgatgaatctttggttgtgttggtttgtggtgcttcatgaca 43275996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 18269766 - 18269808
Alignment:
Q  57 gtttcgatgaatctttggttgtgttagtttgtggtgcttcatg 99  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  18269766 gtttcgatggatctttggttgtgttggtttgtggtgcttcatg 18269808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 18269927 - 18269971
Alignment:
Q  228 taatggtggtttttgtggtggtcaattttagttttggtgatgatg 272  Q
    ||||||||||||||||||||||||||   ||||||||||| ||||    
T  18269927 taatggtggtttttgtggtggtcaatggaagttttggtgacgatg 18269971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University