View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3320_low_28 (Length: 249)
Name: NF3320_low_28
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_low_28 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 18057960 - 18057724
Alignment:
| Q |
13 |
aatatctcaataggtccttaccattatggatcacaacacctacaagaaatggaaattctcaaaaacaagttctttcagcgtctctttgataaaaaaggtg |
112 |
Q |
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| T |
18057960 |
aatatctcaataggtccttaccattatggatcacaacacctacaagaaatggaaattctcaaaaacaagttctttcagcgtctctttgataaaaaaggtg |
18057861 |
T |
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| Q |
113 |
caaatggagccaaattagaagatgcttggaagtttcttgagaaagaagaaatcaatgctagaagatgttacatgggtgaaatcaaattgagcagtgatga |
212 |
Q |
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| T |
18057860 |
caaatggagccaaattagaagatgcttggaagtttcttgagaaagaagagatcaatgctagaagatgttacatgggtgaaatcaaattaagcagtgatga |
18057761 |
T |
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| Q |
213 |
gtttctaaagatgatgttagttgatggttctttcatc |
249 |
Q |
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| T |
18057760 |
gtttctaaagatgatgttagttgatggttctttcatc |
18057724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 15734567 - 15734334
Alignment:
| Q |
16 |
atctcaataggtccttaccattatggatcacaacacctacaagaaatggaaattctcaaaaacaagttctttcagcgtctctttgataaaaaaggtgcaa |
115 |
Q |
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| T |
15734567 |
atctcaataggtccttaccattatggatcacaacacttgcaagaaatggaagttctgaaaaacaagttttttcaccgtctcttcgatccaaacggtgcaa |
15734468 |
T |
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| Q |
116 |
atggagccaaattagaagatgcttggaagtttcttgagaaagaagaaatcaatgctagaagatgttacatgggtgaaatcaaattgagcagtgatgagtt |
215 |
Q |
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| T |
15734467 |
atggatccaaattagaagaggcttgcaagtttcttgagaaagaagaaatcaatgcgcgaaactgttacatgggtgaaatcaaattaagcagtgatgagtt |
15734368 |
T |
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| Q |
216 |
tctaaagatgatgttagttgatggttctttcatc |
249 |
Q |
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| T |
15734367 |
tctaaagatgatgttggttgatggttctttcatc |
15734334 |
T |
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