View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3320_low_29 (Length: 249)
Name: NF3320_low_29
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 11621162 - 11620976
Alignment:
| Q |
16 |
atgatatatttacaaacaccaaaacatatatgtnnnnnnnnntccccttagaaaattttttgtatacgtaaacaagttttagtctaattgacaaaaatac |
115 |
Q |
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| T |
11621162 |
atgatatatttacaaacaccaaa-catatatgtaaaaaaaaatccccgtagaaaaaattt-gtatacattaacaagttttagtctaattgacaaaaatac |
11621065 |
T |
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| Q |
116 |
tatnnnnnnnnnnnnn---catatattgttatttcatttatctactaagaaaaaatattatacaaaaacatctaatcacatctccctat |
201 |
Q |
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| T |
11621064 |
tataaaaaaaaaaaaaaaacatatattgttatttcatttatctattaagaaaaaatattatacaaaaacatctaatcacatctccctat |
11620976 |
T |
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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 11639593 - 11639537
Alignment:
| Q |
173 |
tacaaaaacatctaatcacatctccctataatgacatattgtaatatgattagatat |
229 |
Q |
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| T |
11639593 |
tacaaaaacattcaatcacatcttattaaattgacatattgtaatatgattagatat |
11639537 |
T |
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