View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3320_low_30 (Length: 246)
Name: NF3320_low_30
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 40226486 - 40226725
Alignment:
| Q |
1 |
agacattaaattgaacctctttaacatgaaaatcaataccctttgcnnnnnnnnntgaaaa--tgaatacaatatttgatgtgaaaccagaaattcagaa |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40226486 |
agacattaaattgaacctctttaacatgaaaatcaataccctttgcaaaaaaaaataaaaaaatgaatacaatatttgatgtgaaaccagaaattcagaa |
40226585 |
T |
|
| Q |
99 |
ccttgcaattgaaaaaagtaattaaataattgggacaatgtggaagattaacattgaagggtaaaaaatttaccagatttagaacaaatgttatgatagt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40226586 |
ccttgcaattgaaaaaagtaattaaataattgggacaatgtggaagattaacattgaagggtaaaaaacttaccagatttagaacaaatgttatgatagt |
40226685 |
T |
|
| Q |
199 |
ccttaatgcttttcttcaatgtgttcttggtgttcatctc |
238 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
40226686 |
ccttaatgcttttcttcaatgtgttcttggtgttcttctc |
40226725 |
T |
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