View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3320_low_35 (Length: 239)

Name: NF3320_low_35
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3320_low_35
NF3320_low_35
[»] chr4 (12 HSPs)
chr4 (1-224)||(23402265-23402488)
chr4 (1-88)||(23886018-23886105)
chr4 (1-88)||(24307414-24307501)
chr4 (1-85)||(23453375-23453459)
chr4 (1-84)||(23415713-23415796)
chr4 (1-85)||(23868923-23869007)
chr4 (1-84)||(23408544-23408627)
chr4 (1-88)||(26434215-26434302)
chr4 (1-88)||(26832926-26833013)
chr4 (6-85)||(34662044-34662123)
chr4 (1-88)||(26435995-26436082)
chr4 (20-88)||(31632861-31632929)
[»] chr7 (1 HSPs)
chr7 (1-88)||(47317473-47317560)
[»] chr1 (4 HSPs)
chr1 (1-88)||(33216636-33216723)
chr1 (6-88)||(45576399-45576481)
chr1 (6-81)||(41670596-41670671)
chr1 (9-81)||(29391665-29391737)
[»] chr2 (1 HSPs)
chr2 (3-49)||(14715442-14715488)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 23402265 - 23402488
Alignment:
Q  1 tcagacttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttgcctttgttggga 100  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23402265 tcaggcttgttcttcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttactagttcttagattttcctttgttggga 23402364  T
Q  101 tcttgtttgatgttacttcatcggatattagggattgttagaagttttaattagtagttttagnnnnnnngctttgaagctgtaatgaagtagtgagatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  23402365 tcttgtttgatgttacttcatcggatattagggattgttagaagttttaattagtagttttagtttttttgctttgaagctgtaatgaagtagtgagatc 23402464  T
Q  201 tggttgatcctctttgtgtatgat 224  Q
    ||||||||||||||||||||||||    
T  23402465 tggttgatcctctttgtgtatgat 23402488  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 23886018 - 23886105
Alignment:
Q  1 tcagacttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 88  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23886018 tcaggcttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 23886105  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 24307414 - 24307501
Alignment:
Q  1 tcagacttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 88  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||    
T  24307414 tcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttcttagatttg 24307501  T

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Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 23453459 - 23453375
Alignment:
Q  1 tcagacttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagat 85  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||    
T  23453459 tcagtcttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttactagttcttagat 23453375  T

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Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 23415796 - 23415713
Alignment:
Q  1 tcagacttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttaga 84  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||||||    
T  23415796 tcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttactagctcttaga 23415713  T

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Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 23868923 - 23869007
Alignment:
Q  1 tcagacttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagat 85  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||||    
T  23868923 tcagacttgttcttcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat 23869007  T

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Target: chr4; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 23408627 - 23408544
Alignment:
Q  1 tcagacttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttaga 84  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||| || ||||| |||||||| ||||||||||| |||||||    
T  23408627 tcagacttgttcttcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttactagctcttaga 23408544  T

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Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 26434215 - 26434302
Alignment:
Q  1 tcagacttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 88  Q
    |||| |||||||| || ||||||||||||||||||||||| |||||||| ||||| ||||| || |||||||||||||||||||||||    
T  26434215 tcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttg 26434302  T

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Target: chr4; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 26832926 - 26833013
Alignment:
Q  1 tcagacttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 88  Q
    |||| |||||||| || ||||||||||||||||||||||| |||||||| ||||| ||||| || |||||||||||||||||||||||    
T  26832926 tcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttg 26833013  T

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Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 34662123 - 34662044
Alignment:
Q  6 cttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagat 85  Q
    |||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| || |||||||| |||||||||||    
T  34662123 cttgttcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaagttcttagat 34662044  T

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Target: chr4; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 26435995 - 26436082
Alignment:
Q  1 tcagacttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 88  Q
    |||| |||||||| || ||||||||||||||||||| ||| |||||||| ||||| ||||| || |||||||| ||||||||||||||    
T  26435995 tcaggcttgttctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttcttagatttg 26436082  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 31632861 - 31632929
Alignment:
Q  20 tgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 88  Q
    ||||||||| ||||||| ||| | |||||| ||||||| ||||||||| || || || |||||||||||    
T  31632861 tgaattggctaagcatgttgtttgtgagggtaccaaagttgtgaccaaattcacaagctcttagatttg 31632929  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 47317473 - 47317560
Alignment:
Q  1 tcagacttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 88  Q
    |||||||| |||||||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  47317473 tcagacttattcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagctgtgaccaagtttactagttcttaaatttg 47317560  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 33216636 - 33216723
Alignment:
Q  1 tcagacttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 88  Q
    ||||||||||||||| ||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||| ||||||| |||||    
T  33216636 tcagacttgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggctgtgaccaagtttactggttcttaaatttg 33216723  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 45576399 - 45576481
Alignment:
Q  6 cttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 88  Q
    |||||||| || | ||||||||| ||||||| ||| |||||||| ||||||||||||||||| || || || |||||||||||    
T  45576399 cttgttctgcccgatgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttagatttg 45576481  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 41670596 - 41670671
Alignment:
Q  6 cttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttctt 81  Q
    |||||||| || |||||| | || |||||||||||||||||||||||||| ||||| ||||| || ||||| ||||    
T  41670596 cttgttctccccggtgaacttgctaagcatgctgtctctgagggaaccaaggctgttaccaaattcactagctctt 41670671  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 29391665 - 29391737
Alignment:
Q  9 gttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttctt 81  Q
    |||||||| ||||||||||| || |||||||| || || |||||||| ||||| ||||| ||||| |||||||    
T  29391665 gttcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgttaccaaatttacgagttctt 29391737  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 14715442 - 14715488
Alignment:
Q  3 agacttgttcttcctggtgaattggccaagcatgctgtctctgaggg 49  Q
    ||||||||||||||||| |||||||||||||||| ||| ||||||||    
T  14715442 agacttgttcttcctggagaattggccaagcatgttgtgtctgaggg 14715488  T

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