View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3320_low_37 (Length: 238)
Name: NF3320_low_37
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 11620167 - 11620067
Alignment:
| Q |
1 |
aattagggacattaaaaatatatagttgtgcatatattatagatcttatgaagcatagtgagttaatttctgccactgttcctctcattgttccaatttc |
100 |
Q |
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| T |
11620167 |
aattagggacattaaaaatatatagttgtgcatatattatagatcttatgaagcatagtgagttaatttctgccactgttcctctcattgttccaatttc |
11620068 |
T |
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| Q |
101 |
c |
101 |
Q |
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| T |
11620067 |
c |
11620067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 11620021 - 11619924
Alignment:
| Q |
106 |
atgttattagtttataactatttttcttgttgtgttagtaaacattgaaatgtacgtgatcatagataccgaacatgatatcttttaactttcacggt |
203 |
Q |
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| T |
11620021 |
atgttattagtttataactatttttcttgttgttttagtaaacattgaaatgtacgtgatcatagataccgaacatgatatcttttaactttcacggt |
11619924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 11643719 - 11643654
Alignment:
| Q |
108 |
gttattagtttataactatttttcttgttgtgttagtaaacattgaaatgtacgtgatcatagata |
173 |
Q |
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| T |
11643719 |
gttattagtttataaccatttttcttgtcgtgttagtaaacattgatatatacgtgatcatagata |
11643654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 11653091 - 11653023
Alignment:
| Q |
135 |
ttgtgttagtaaacattgaaatgtacgtgatcatagataccgaacatgatatcttttaactttcacggt |
203 |
Q |
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| T |
11653091 |
ttgtgttagtaaacattggtatgtacgtgatcatatatactgaacatgatatattttaactttcacggt |
11653023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 11638571 - 11638509
Alignment:
| Q |
141 |
tagtaaacattgaaatgtacgtgatcatagataccgaacatgatatcttttaactttcacggt |
203 |
Q |
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| T |
11638571 |
tagtaaacattgatatgtacgtgatcatatatactgaacatgatatattttaactttcacggt |
11638509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 11638766 - 11638679
Alignment:
| Q |
1 |
aattagggacattaaaaatatatagttgtgcatatattata-gatcttatgaagcatagtgagttaatttctgccactgttcctctcatt |
89 |
Q |
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| T |
11638766 |
aattagggacattaaaaatat-ta-ttgtgcatatatcataagatcccatgcagcatagtgagttaacttctgccattgttcctctcatt |
11638679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 11635012 - 11634952
Alignment:
| Q |
141 |
tagtaaacattgaaatgtacgtgatcatagataccgaacatgatatcttttaactttcacg |
201 |
Q |
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||||||||||||| ||||||||||||||| |||| ||||||||||| |||||| ||||||| |
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| T |
11635012 |
tagtaaacattgatatgtacgtgatcatatatactgaacatgatatattttaattttcacg |
11634952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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