View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3320_low_43 (Length: 214)
Name: NF3320_low_43
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 18057393 - 18057209
Alignment:
| Q |
12 |
gagcagagaggacgtcagagcgagatgattcattcaataaccgaactaaaagaagggggtgtgaaaattaaagcttgtgagaatagagaattgttggata |
111 |
Q |
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| T |
18057393 |
gagctgagaggacgtcagagcgagatgattcattcaataaccgaactaaaagaagggggtgtgaaaattaaagcttgtgagaatagagaattgttggata |
18057294 |
T |
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| Q |
112 |
taagctttggnnnnnnntggggagtcatgataaagcaactaactattcctccattgtacattggtgatcatagaggaaccgtgtt |
196 |
Q |
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| T |
18057293 |
taagctttggaaaaaaatggggagttatgataaagcaactaactattcctccattgtacattggtgatcatagaggaaccgtgtt |
18057209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 15727981 - 15727812
Alignment:
| Q |
18 |
agaggacgtcagagcgagatgattcattcaataaccgaactaaaagaagggggtgtgaaaattaaagcttgtgagaatagagaattgttggatataagct |
117 |
Q |
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| T |
15727981 |
agaggatgtcagagccagatgattcattcaataacagaactaaaaaaagggggtgtgaaaactaaagcatgtgagagtagagaattgatggatataagct |
15727882 |
T |
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| Q |
118 |
ttggnnnnnnntggggagtcatgataaagcaactaactattcctccattgtacattggtgatcatagagg |
187 |
Q |
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| T |
15727881 |
ttggaaaaaaatggggaattatggtaaaggaactaactattccacctttgtacattggtgatcacagagg |
15727812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 15734000 - 15733831
Alignment:
| Q |
18 |
agaggacgtcagagcgagatgattcattcaataaccgaactaaaagaagggggtgtgaaaattaaagcttgtgagaatagagaattgttggatataagct |
117 |
Q |
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| T |
15734000 |
agaggatgtcagagccagatgattcattcaataacagaactaaaagaagggggtgtgaaaattaaagcctgcgagagtagagagttgatggatataagct |
15733901 |
T |
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| Q |
118 |
ttggnnnnnnntggggagtcatgataaagcaactaactattcctccattgtacattggtgatcatagagg |
187 |
Q |
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|||| |||||| | ||| ||||| ||||||||||||| || ||||||||||||||||| ||||| |
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| T |
15733900 |
ttggaaaaaaatggggaattatggtaaaggaactaactattccacctttgtacattggtgatcacagagg |
15733831 |
T |
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