View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3320_low_6 (Length: 433)
Name: NF3320_low_6
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 10792947 - 10793349
Alignment:
| Q |
18 |
gacgaacaacacaatactgctttcatatgatgaaatcaagagaaaaataaaacttaaatctacctgaacattacttaattagattaaaataaggnnnnnn |
117 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||| | |||||| |
|
|
| T |
10792947 |
gacgaacaacacagcactgctctcatatgatgaaatcacgagaaaaat-aaacttaaatctatgtgaacattacttaattagattgatataaggaaaaaa |
10793045 |
T |
|
| Q |
118 |
ngatgaa---gatgatttcgggtaaaaattgatctcaaaccacacttctttattaatgacttccaatcaccacatttcatttaaattgaactaaccatat |
214 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10793046 |
agatgaagatgatgatttcgggtaaaaattgatctcaaaccacacttctttgttaatgacttccaatcaccacatttcatttaaattgaactaaccatat |
10793145 |
T |
|
| Q |
215 |
ccccatcaaatgattctgtggagatcagagcggcaagatctaactcaaaagattttttgttaacaaaattgcattgtttccttatttctcctttctttcc |
314 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10793146 |
ccccatcaaatgattctgtggagaccagagcggcaagatctaactcagaagattttttgttaacaaaattgcattgtttccttatttctcctttctttcc |
10793245 |
T |
|
| Q |
315 |
ggtacgcacaccaatattacccattttaatcattgctttcttaaagctctcaaagaaagcactttggttcttggcaaagttattaacaatgctagtggta |
414 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10793246 |
ggtaagcacaccaatattacccattttaatcattgctttcttaaagctctcaaagaaagcactttggttattggcaaagttattaacaatgctagtggta |
10793345 |
T |
|
| Q |
415 |
tctg |
418 |
Q |
| |
|
|||| |
|
|
| T |
10793346 |
tctg |
10793349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 190 - 418
Target Start/End: Complemental strand, 11111673 - 11111445
Alignment:
| Q |
190 |
ttcatttaaattgaactaaccatatccccatcaaatgattctgtggagatcagagcggcaagatctaactcaaaagattttttgttaacaaaattgcatt |
289 |
Q |
| |
|
|||||||| |||||||||||||||||||| || | |||||||| ||| || | | ||||||| || ||| ||||||| ||||||| ||||||||||| |
|
|
| T |
11111673 |
ttcatttagattgaactaaccatatccccttccattgattctgcagaggccacaatgccaagatccaattcagaagatttcttgttaataaaattgcatt |
11111574 |
T |
|
| Q |
290 |
gtttccttatttctcctttctttccggtacgcacaccaatattacccattttaatcattgctttcttaaagctctcaaagaaagcactttggttcttggc |
389 |
Q |
| |
|
|||| || ||||||||||||||||||||| ||||| |||||||||||||||||||||||| || ||||| ||| ||||||| || ||||| | || || |
|
|
| T |
11111573 |
gttttctaatttctcctttctttccggtaagcacatcaatattacccattttaatcattgaatttataaagttctgaaagaaaacattttggctatttgc |
11111474 |
T |
|
| Q |
390 |
aaagttattaacaatgctagtggtatctg |
418 |
Q |
| |
|
|||| | || ||||||||| ||||||||| |
|
|
| T |
11111473 |
aaagctgttgacaatgctaatggtatctg |
11111445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 190 - 418
Target Start/End: Complemental strand, 11119441 - 11119216
Alignment:
| Q |
190 |
ttcatttaaattgaactaaccatatccccatcaaatgattctgtggagatcagagcggcaagatctaactcaaaagattttttgttaacaaaattgcatt |
289 |
Q |
| |
|
|||||||| |||||||||||||||||||| || | |||||||| || ||| | |||||||| || ||| ||||||| ||||||||||||||||| | |
|
|
| T |
11119441 |
ttcatttagattgaactaaccatatccccctccattgattctgagg---tcacactagcaagatccaattcagaagatttcttgttaacaaaattgcact |
11119345 |
T |
|
| Q |
290 |
gtttccttatttctcctttctttccggtacgcacaccaatattacccattttaatcattgctttcttaaagctctcaaagaaagcactttggttcttggc |
389 |
Q |
| |
|
| || || ||||||||||||||||| ||| |||| ||||||||||||||||||||||||| || ||||| ||| |||||| || ||||||| || | |
|
|
| T |
11119344 |
gctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttcc |
11119245 |
T |
|
| Q |
390 |
aaagttattaacaatgctagtggtatctg |
418 |
Q |
| |
|
|||||| || ||||||||| ||||||||| |
|
|
| T |
11119244 |
aaagttgttgacaatgctaatggtatctg |
11119216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 374
Target Start/End: Complemental strand, 11156842 - 11156741
Alignment:
| Q |
273 |
gttaacaaaattgcattgtttccttatttctcctttctttccggtacgcacaccaatattacccattttaatcattgctttcttaaagctctcaaagaaa |
372 |
Q |
| |
|
||||||||| ||||||||||| || || ||||||||| | || || ||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11156842 |
gttaacaaagttgcattgttttctaatctctcctttcgtccctgttagcacaccaatattgcccattttaatcattgcagccttaaagctctcaaagaaa |
11156743 |
T |
|
| Q |
373 |
gc |
374 |
Q |
| |
|
|| |
|
|
| T |
11156742 |
gc |
11156741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 416
Target Start/End: Complemental strand, 11146204 - 11146062
Alignment:
| Q |
274 |
ttaacaaaattgcattgtttccttatttctcctttctttccggtacgcacaccaatattacccattttaatcattgctttcttaaagctctcaaagaaag |
373 |
Q |
| |
|
|||||||| ||||||||||| || || ||||||| || ||||| |||||||||||| |||||||||||||| || ||||||||||||||| |||| |
|
|
| T |
11146204 |
ttaacaaagttgcattgttttctaatctctccttggttcccggttaacacaccaatatttcccattttaatcatagcagccttaaagctctcaaaaaaag |
11146105 |
T |
|
| Q |
374 |
cactttggttcttggcaaagttattaacaatgctagtggtatc |
416 |
Q |
| |
|
| |||| | |||||||||| || ||||||||| ||||||| |
|
|
| T |
11146104 |
ctttttgatcagtggcaaagttgttgacaatgctaatggtatc |
11146062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 11137899 - 11137826
Alignment:
| Q |
274 |
ttaacaaaattgcattgtttccttatttctcctttctttccggtacgcacaccaatattacccattttaatcat |
347 |
Q |
| |
|
|||||||||||||| ||||| || || |||||||| || ||||| |||||||||||||||||||||||||||| |
|
|
| T |
11137899 |
ttaacaaaattgcaatgttttctaatctctccttttttcccggtcagcacaccaatattacccattttaatcat |
11137826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 419
Target Start/End: Complemental strand, 11150173 - 11150028
Alignment:
| Q |
274 |
ttaacaaaattgcattgtttccttatttctcctttctttccggtacgcacaccaatattacccattttaatcattgctttcttaaagctctcaaagaaag |
373 |
Q |
| |
|
|||||||| ||||||||||| || || ||||||| || || || |||||||||||| |||||||| ||||| || ||||||||||||||| |||| |
|
|
| T |
11150173 |
ttaacaaagttgcattgttttctaatctctccttgtttcccagttaacacaccaatatttcccattttgatcatagcagccttaaagctctcaaaaaaag |
11150074 |
T |
|
| Q |
374 |
cactttggttcttggcaaagttattaacaatgctagtggtatctga |
419 |
Q |
| |
|
| |||| | | ||||| || || ||||||||| |||||||||| |
|
|
| T |
11150073 |
ctttttgatcggttgcaaatttgttgacaatgctaatggtatctga |
11150028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University