View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3320_low_7 (Length: 421)
Name: NF3320_low_7
Description: NF3320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3320_low_7 |
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| [»] scaffold0478 (1 HSPs) |
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Alignment Details
Target: scaffold0478 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: scaffold0478
Description:
Target: scaffold0478; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 119 - 404
Target Start/End: Complemental strand, 12251 - 11966
Alignment:
| Q |
119 |
cccccggaatctggaatatcatttgcttaggcacttgctggaccgaaagactacaagcttactcaacttcctccgaaagttgtgatggggaaatcggttc |
218 |
Q |
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| T |
12251 |
cccccggaatctggaatatcgtttgctcaggcacttgctggaccgaaagactacaagcttactcaacttcctccgaaagttgtgatggggaaatccgttc |
12152 |
T |
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| Q |
219 |
gagtcaaaatcagacaaaccgaatatgaatctgggctcattgactgtagcagcaacattcatggaagattaacacttcgcagaggtgatactcctttatc |
318 |
Q |
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| T |
12151 |
gagtcaaaatcacacaaaccgaatatgaatctgggctcattgactgtagcagcaacattcatggaaggttaacacttcgcagaggtgatactcctttatc |
12052 |
T |
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| Q |
319 |
tactatggctttaacgctgcaattgagcaatatgtggccaaatatacataattgggatataactcctctaggaaagggcttctttg |
404 |
Q |
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| T |
12051 |
tattatggctttaaagctgcaattgagcaatatgtggccaaatatacataattgggatataactcctctaggaaagggcttctttg |
11966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 155 - 404
Target Start/End: Original strand, 26153288 - 26153536
Alignment:
| Q |
155 |
gctggaccgaaagactacaagcttactcaacttcctccgaaagttgtgatggggaaatcggttcgagtcaaaatcagacaaaccgaatatgaatctgggc |
254 |
Q |
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| T |
26153288 |
gctggtccgaaagattatcagcttactcaacttcctccgaaagttgtgatggggaaaaccattcgcgttaaaatcatacaatctgaatacgcagctgggc |
26153387 |
T |
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| Q |
255 |
tcattgactgtagcagcaacattcatggaagattaacacttcgcagaggtgatactcctttatctactatggctttaacgctgcaattgagcaatatgtg |
354 |
Q |
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| T |
26153388 |
acgttgattgcagcagcaatatccatggcgg-ttgacgctgcacaaaggtgatacccctttatctactatggctttgaagttaaaattgagtaatttgtg |
26153486 |
T |
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| Q |
355 |
gccaaatatacataattgggatataactcctctaggaaagggcttctttg |
404 |
Q |
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| T |
26153487 |
gccaaacatacataattgggatataactccactaggaaagggcttttttg |
26153536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 8680730 - 8680835
Alignment:
| Q |
13 |
gcagagacgaaacaaacatttaattcttaacaaaatgatttacaatgatatggggatgggacagggacacccgaacaaagtgatattcaatttttcagtt |
112 |
Q |
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|||| ||| ||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8680730 |
gcagggaccaaacacacatttaagccttaacaaaatgatttacaatgatacggggatgggacagggacacccgaacaaagtgatattcaatttttcagtt |
8680829 |
T |
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| Q |
113 |
tattga |
118 |
Q |
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|||||| |
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| T |
8680830 |
tattga |
8680835 |
T |
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